RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 CHST12Q9NRB3 414 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 AGPAT5Q9NUQ2 364 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 EXOC1Q9NV70 894 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 PCDHGC3Q9UN70 934 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 PIN4Q9Y237 131 aaKnown RBP10.06□□□□□ -0.8
VPS53-203ENST00000401468 CFAP54Q96N23 3096 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 DOCK8Q8NF50 2099 aa10.06□□□□□ -0.8
VPS53-203ENST00000401468 ZNF318Q5VUA4 2279 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 A0A1B0GUA9 196 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 CCDC169A6NNP5 214 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 HIDE1A8MVS5 230 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 K7ENM7 598 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 K7ERI5 159 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 RB1P06400 928 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 WEE2P0C1S8 567 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 NFIL3Q16649 462 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 MAPK6Q16659 721 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 CTC1Q2NKJ3 1217 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 ZC2HC1CQ53FD0 456 aaPredicted RBP10.05□□□□□ -0.8
VPS53-203ENST00000401468 TWF2Q6IBS0 349 aaKnown RBP10.05□□□□□ -0.8
VPS53-203ENST00000401468 SLC39A4Q6P5W5 647 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 ZPBP2Q6X784 338 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 CDR2LQ86X02 465 aaPredicted RBP10.05□□□□□ -0.8
VPS53-203ENST00000401468 GJD3Q8N144 294 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 GUF1Q8N442 669 aaKnown RBP10.05□□□□□ -0.8
VPS53-203ENST00000401468 BCL7CQ8WUZ0 217 aaPredicted RBP10.05□□□□□ -0.8
VPS53-203ENST00000401468 CCDC47Q96A33 483 aaKnown RBP10.05□□□□□ -0.8
VPS53-203ENST00000401468 SYAP1Q96A49 352 aaPredicted RBP10.05□□□□□ -0.8
VPS53-203ENST00000401468 CCDC51Q96ER9 411 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 CPB2Q96IY4 423 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 ACO2Q99798 780 aaKnown RBP10.05□□□□□ -0.8
VPS53-203ENST00000401468 FUCA2Q9BTY2 467 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 KCTD10Q9H3F6 313 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 CLEC1BQ9P126 229 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 DACH1Q9UI36 760 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 TNFSF13BQ9Y275 285 aa10.05□□□□□ -0.8
VPS53-203ENST00000401468 USP34Q70CQ2 3546 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 INO80B-WBP1J3KQ70 363 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 TGFB1I1O43294 461 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 MBTPS2O43462 519 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 FAM189A1O60320 539 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 ZC3H11AO75152 810 aaKnown RBP eCLIP10.04□□□□□ -0.8
VPS53-203ENST00000401468 GCNT3O95395 438 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 PRKCBP05771 671 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 ZSCAN20P17040 1043 aaPredicted RBP10.04□□□□□ -0.8
VPS53-203ENST00000401468 ARF4P18085 180 aaPredicted RBP10.04□□□□□ -0.8
VPS53-203ENST00000401468 PPP1R2P41236 205 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 MCCD1P59942 119 aaPredicted RBP10.04□□□□□ -0.8
VPS53-203ENST00000401468 SNRPFP62306 86 aaKnown RBP10.04□□□□□ -0.8
VPS53-203ENST00000401468 KCNA1Q09470 495 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 KNOP1Q1ED39 458 aaKnown RBP10.04□□□□□ -0.8
VPS53-203ENST00000401468 ZCWPW2Q504Y3 356 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 CT47A1Q5JQC4 288 aaPredicted RBP10.04□□□□□ -0.8
VPS53-203ENST00000401468 UBXN11Q5T124 520 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 CAVIN1Q6NZI2 390 aaKnown RBP10.04□□□□□ -0.8
VPS53-203ENST00000401468 STXBP4Q6ZWJ1 553 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 CATSPER4Q7RTX7 472 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 C12orf56Q8IXR9 622 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 ABI1Q8IZP0 508 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 ADSSL1Q8N142 457 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 RABGGTAQ92696 567 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 APOL6Q9BWW8 343 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 MRPL4Q9BYD3 311 aaKnown RBP10.04□□□□□ -0.8
VPS53-203ENST00000401468 ZHX3Q9H4I2 956 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 TLE6Q9H808 572 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 TMEM206Q9H813 350 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 SLC39A2Q9NP94 309 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 ENTPD7Q9NQZ7 604 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 TLR9Q9NR96 1032 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 C1orf112Q9NSG2 853 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 TMEM161AQ9NX61 479 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 CGNQ9P2M7 1197 aaKnown RBP10.04□□□□□ -0.8
VPS53-203ENST00000401468 CACNG4Q9UBN1 327 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 DNAJB4Q9UDY4 337 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 CD207Q9UJ71 328 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 USP20Q9Y2K6 914 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 GDAQ9Y2T3 454 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 RWDD3Q9Y3V2 267 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 PCDHB12Q9Y5F1 795 aa10.04□□□□□ -0.8
VPS53-203ENST00000401468 A0A0B4J269 797 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 F8W810 466 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 PDXKO00764 312 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 B4GALT5O43286 388 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 ZNF623O75123 536 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 LETM1O95202 739 aaPredicted RBP10.03□□□□□ -0.8
VPS53-203ENST00000401468 NDUFV2P19404 249 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 ADSSP30520 456 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 PRCPP42785 496 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 WNT7BP56706 349 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 FAM189BP81408 668 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 ZP2Q05996 745 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 MCL1Q07820 350 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 ADAM15Q13444 863 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 PRPF4BQ13523 1007 aaKnown RBP10.03□□□□□ -0.8
VPS53-203ENST00000401468 CENPPQ6IPU0 288 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 NOTUMQ6P988 496 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 KCNT2Q6UVM3 1135 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 ZC3H3Q8IXZ2 948 aaKnown RBP10.03□□□□□ -0.8
VPS53-203ENST00000401468 P2RX5Q93086 422 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 ACCSQ96QU6 501 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 107.8 ms