RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 STXBP3O00186 592 aa11.97□□□□□ -0.49
TTC28-201ENST00000397906 GFAPP14136 432 aa11.97□□□□□ -0.49
TTC28-201ENST00000397906 RCAN1P53805 252 aa11.97□□□□□ -0.49
TTC28-201ENST00000397906 PDCD2Q16342 344 aaPredicted RBP11.97□□□□□ -0.49
TTC28-201ENST00000397906 SPDYE7PQ495Y7 208 aa11.97□□□□□ -0.49
TTC28-201ENST00000397906 MAP1SQ66K74 1059 aaPredicted RBP11.97□□□□□ -0.49
TTC28-201ENST00000397906 AKT1S1Q96B36 256 aa11.97□□□□□ -0.49
TTC28-201ENST00000397906 TTLL13PA6NNM8 815 aa11.97□□□□□ -0.49
TTC28-201ENST00000397906 TAF11Q15544 211 aa11.97□□□□□ -0.49
TTC28-201ENST00000397906 KRT80Q6KB66 452 aa11.97□□□□□ -0.49
TTC28-201ENST00000397906 TRIM72Q6ZMU5 477 aa11.97□□□□□ -0.49
TTC28-201ENST00000397906 FZD1Q9UP38 647 aa11.97□□□□□ -0.49
TTC28-201ENST00000397906 ITGB3P05106 788 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 CDH18Q13634 790 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 ANKS3Q6ZW76 656 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 WDR75Q8IWA0 830 aaKnown RBP11.96□□□□□ -0.49
TTC28-201ENST00000397906 SNF8Q96H20 258 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 NPEPPSP55786 919 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 AGBL3Q8NEM8 1001 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 TSSK1BQ9BXA7 367 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 EIF3BP55884 814 aaKnown RBP11.96□□□□□ -0.49
TTC28-201ENST00000397906 DEUP1Q05D60 604 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 ENOSF1Q7L5Y1 443 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 ABCB6Q9NP58 842 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 LATS2Q9NRM7 1088 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 H0Y626 953 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 TEX33O43247 280 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 APRTP07741 180 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 MEI1Q5TIA1 1274 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 RBBP8NLQ8NC74 664 aaPredicted RBP11.96□□□□□ -0.49
TTC28-201ENST00000397906 FOPNLQ96NB1 174 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 MED15Q96RN5 788 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 POLR1AO95602 1720 aaPredicted RBP11.96□□□□□ -0.49
TTC28-201ENST00000397906 RTN2O75298 545 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 MTM1Q13496 603 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 KLHL38Q2WGJ6 581 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 NEUROG2Q9H2A3 272 aa11.96□□□□□ -0.49
TTC28-201ENST00000397906 CNOT10Q9H9A5 744 aaKnown RBP11.96□□□□□ -0.49
TTC28-201ENST00000397906 ATMINO43313 823 aaPredicted RBP11.96□□□□□ -0.5
TTC28-201ENST00000397906 SPARCL1Q14515 664 aa11.96□□□□□ -0.5
TTC28-201ENST00000397906 SGSM1Q2NKQ1 1148 aa11.96□□□□□ -0.5
TTC28-201ENST00000397906 SPATS2Q86XZ4 545 aaKnown RBP11.96□□□□□ -0.5
TTC28-201ENST00000397906 DCP1BQ8IZD4 617 aaKnown RBP11.96□□□□□ -0.5
TTC28-201ENST00000397906 ELMO2Q96JJ3 720 aa11.96□□□□□ -0.5
TTC28-201ENST00000397906 ALG13Q9NP73 1137 aaKnown RBP11.96□□□□□ -0.5
TTC28-201ENST00000397906 GOLGA8RI6L899 631 aa11.96□□□□□ -0.5
TTC28-201ENST00000397906 TDRD10Q5VZ19 366 aaKnown RBP11.96□□□□□ -0.5
TTC28-201ENST00000397906 FRMD5Q7Z6J6 570 aa11.96□□□□□ -0.5
TTC28-201ENST00000397906 ELAC2Q9BQ52 826 aaKnown RBP11.96□□□□□ -0.5
TTC28-201ENST00000397906 WNT8AQ9H1J5 351 aa11.96□□□□□ -0.5
TTC28-201ENST00000397906 STARD7Q9NQZ5 370 aa11.96□□□□□ -0.5
TTC28-201ENST00000397906 RFC5P40937 340 aa11.96□□□□□ -0.5
TTC28-201ENST00000397906 TRIM55Q9BYV6 548 aa11.96□□□□□ -0.5
TTC28-201ENST00000397906 PMS2P54278 862 aa11.96□□□□□ -0.5
TTC28-201ENST00000397906 KDM4CQ9H3R0 1056 aa11.96□□□□□ -0.5
TTC28-201ENST00000397906 ZFXP17010 805 aaPredicted RBP11.95□□□□□ -0.5
TTC28-201ENST00000397906 TYK2P29597 1187 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 PITPNM3Q9BZ71 974 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 SLC25A13Q9UJS0 675 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 NT5C1AQ9BXI3 368 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 APEX2Q9UBZ4 518 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 TTC26A0AVF1 554 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 FMR1NBQ8N0W7 255 aaPredicted RBP11.95□□□□□ -0.5
TTC28-201ENST00000397906 TAGAPQ8N103 731 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 PHF20Q9BVI0 1012 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 EPB41L4AQ9HCS5 686 aaPredicted RBP11.95□□□□□ -0.5
TTC28-201ENST00000397906 TXLNGQ9NUQ3 528 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 OSBPL9Q96SU4 736 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 ZFATQ9P243 1243 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 FGFR4P22455 802 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 GRAMD1BQ3KR37 738 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 HPDLQ96IR7 371 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 POLR3CQ9BUI4 534 aaPredicted RBP11.95□□□□□ -0.5
TTC28-201ENST00000397906 APOL5Q9BWW9 433 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 ADA2Q9NZK5 511 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 CAPN11Q9UMQ6 739 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 MAPK13O15264 365 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 ENDOD1O94919 500 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 SOX11P35716 441 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 ACTR2P61160 394 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 TAP1Q03518 808 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 CHSY1Q86X52 802 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 CHORDC1Q9UHD1 332 aaPredicted RBP11.95□□□□□ -0.5
TTC28-201ENST00000397906 ODC1P11926 461 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 GUF1Q8N442 669 aaKnown RBP11.95□□□□□ -0.5
TTC28-201ENST00000397906 CYP4F11Q9HBI6 524 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 SENP2Q9HC62 589 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 CNTNAP4Q9C0A0 1308 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 ZNF197O14709 1029 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 TRIM45Q9H8W5 580 aaPredicted RBP11.95□□□□□ -0.5
TTC28-201ENST00000397906 PIK3C2BO00750 1634 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 MADDQ8WXG6 1647 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 ZNF500O60304 480 aaPredicted RBP11.95□□□□□ -0.5
TTC28-201ENST00000397906 GYS1P13807 737 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 PCSK1P29120 753 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 CAP2P40123 477 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 TBC1D19Q8N5T2 526 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 TMEM117Q9H0C3 514 aa11.95□□□□□ -0.5
TTC28-201ENST00000397906 HBP1O60381 514 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 E2F5Q15329 346 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms