RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 L2HGDHQ9H9P8 463 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 SLC1A1P43005 524 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 ITGA8P53708 1063 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 TTC39BQ5VTQ0 682 aaPredicted RBP12.44□□□□□ -0.42
SYNPO-202ENST00000394243 CYFIP1Q7L576 1253 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 CDH24Q86UP0 819 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 THNSL1Q8IYQ7 743 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 TASP1Q9H6P5 420 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 ATP8B3O60423 1300 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 MYO3BQ8WXR4 1341 aa12.44□□□□□ -0.42
SYNPO-202ENST00000394243 SOX6P35712 828 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 SLC27A3Q5K4L6 730 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 PDXDC2PQ6P474 469 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 OLFML1Q6UWY5 402 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 PID1Q7Z2X4 250 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 TBC1D10CQ8IV04 446 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 C6orf203Q9P0P8 240 aaPredicted RBP12.43□□□□□ -0.42
SYNPO-202ENST00000394243 EMSYQ7Z589 1322 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 M0QYV0 167 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 CYP26A1O43174 497 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 ASNA1O43681 348 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 AARS2Q5JTZ9 985 aaKnown RBP12.43□□□□□ -0.42
SYNPO-202ENST00000394243 SPDYAQ5MJ70 313 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 SLC30A5Q8TAD4 765 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 C17orf80Q9BSJ5 609 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 GYPCP04921 128 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 AKR1B1P15121 316 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 LRRC74AQ0VAA2 488 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 MEI1Q5TIA1 1274 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 GADL1Q6ZQY3 521 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 SETD3Q86TU7 594 aaPredicted RBP12.43□□□□□ -0.42
SYNPO-202ENST00000394243 REXO1L1PQ8IX06 675 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 RCOR2Q8IZ40 523 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 KCNB2Q92953 911 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 HPS3Q969F9 1004 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 SERPINB12Q96P63 405 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 FAM118BQ9BPY3 351 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 PPCSQ9HAB8 311 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 TMBIM4Q9HC24 238 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 PIH1D3Q9NQM4 214 aaKnown RBP12.43□□□□□ -0.42
SYNPO-202ENST00000394243 RAB6BQ9NRW1 208 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 TCOF1Q13428 1488 aaKnown RBP12.43□□□□□ -0.42
SYNPO-202ENST00000394243 C1orf232A0A0U1RR37 186 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 SSU72P8A0A1W2PR75 194 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 SLC16A4O15374 487 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 GDF11O95390 407 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 KRT16P08779 473 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 KCNJ1P48048 391 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 KCNMA1Q12791 1236 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 MTM1Q13496 603 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 ITPRIPL1Q6GPH6 555 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 UTYO14607 1347 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 MFN2O95140 757 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 HMOX2P30519 316 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 SERPINB9P50453 376 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 PTPN12Q05209 780 aaKnown RBP12.43□□□□□ -0.42
SYNPO-202ENST00000394243 PPIDQ08752 370 aaKnown RBP12.43□□□□□ -0.42
SYNPO-202ENST00000394243 TRIM72Q6ZMU5 477 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 FRMD5Q7Z6J6 570 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 EPS8L3Q8TE67 593 aaKnown RBP12.43□□□□□ -0.42
SYNPO-202ENST00000394243 ARHGEF37A1IGU5 675 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 CCDC78A2IDD5 438 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 RHOBTB1O94844 696 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 RFX1P22670 979 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 TBXAS1P24557 533 aaPredicted RBP12.43□□□□□ -0.42
SYNPO-202ENST00000394243 NFKBIAP25963 317 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 ARMCX4Q5H9R4 360 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 FAM102AQ5T9C2 384 aaPredicted RBP12.43□□□□□ -0.42
SYNPO-202ENST00000394243 WDR93Q6P2C0 686 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 ARL10Q8N8L6 244 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 MAML3Q96JK9 1138 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 MAGEB18Q96M61 343 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 NDFIP2Q9NV92 336 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 CDY2AQ9Y6F7 541 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 CDY1Q9Y6F8 540 aa12.43□□□□□ -0.42
SYNPO-202ENST00000394243 POTEFA5A3E0 1075 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 POTEIP0CG38 1075 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 Q3C1V9 767 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 RSBN1Q5VWQ0 802 aaPredicted RBP12.42□□□□□ -0.42
SYNPO-202ENST00000394243 POTEGQ6S5H5 508 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 POTEEQ6S8J3 1075 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 RBBP8NLQ8NC74 664 aaPredicted RBP12.42□□□□□ -0.42
SYNPO-202ENST00000394243 SENP7Q9BQF6 1050 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 L1RE1Q9UN81 338 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 PPIP5K2O43314 1243 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 CYTH3O43739 400 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 TOMM70O94826 608 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 SNRPAP09012 282 aaKnown RBP12.42□□□□□ -0.42
SYNPO-202ENST00000394243 TRIM69Q86WT6 500 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 ST13P5Q8NFI4 369 aaPredicted RBP12.42□□□□□ -0.42
SYNPO-202ENST00000394243 MIEF2Q96C03 454 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 WNK4Q96J92 1243 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 MMTAG2Q9BU76 263 aaKnown RBP12.42□□□□□ -0.42
SYNPO-202ENST00000394243 C15orf41Q9Y2V0 281 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 CDC25CP30307 473 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 HSPA2P54652 639 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 LAMC2Q13753 1193 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 NAB2Q15742 525 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 RAD21L1Q9H4I0 556 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 NOL6Q9H6R4 1146 aaKnown RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 315.3 ms