RNA–Protein interactions for RNA: ENST00000393368.2

HMGB3P1-201, Transcript of high mobility group box 3 pseudogene 1, humanhuman

BASIC

Gene HMGB3P1, Length 573 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P1-201ENST00000393368 RPF1Q9H9Y2 349 aaKnown RBP8.35□□□□□ -1.07
HMGB3P1-201ENST00000393368 MAGEF1Q9HAY2 307 aa8.35□□□□□ -1.07
HMGB3P1-201ENST00000393368 SLC39A2Q9NP94 309 aa8.35□□□□□ -1.07
HMGB3P1-201ENST00000393368 CD320Q9NPF0 282 aa8.35□□□□□ -1.07
HMGB3P1-201ENST00000393368 CHST7Q9NS84 486 aa8.35□□□□□ -1.07
HMGB3P1-201ENST00000393368 CPSF3Q9UKF6 684 aaKnown RBP8.35□□□□□ -1.07
HMGB3P1-201ENST00000393368 AGO2Q9UKV8 859 aaKnown RBP8.35□□□□□ -1.07
HMGB3P1-201ENST00000393368 USP15Q9Y4E8 981 aaPredicted RBP8.35□□□□□ -1.07
HMGB3P1-201ENST00000393368 PCDHB13Q9Y5F0 798 aa8.35□□□□□ -1.07
HMGB3P1-201ENST00000393368 MYO7AQ13402 2215 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 FAM237AA0A1B0GTK4 181 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 A0A1W2PQ27 194 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 A0A1W2PQ64 194 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 A0A1W2PQD8 194 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 CARNS1A5YM72 827 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 SCP2P22307 547 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 SP100P23497 879 aaPredicted RBP8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 CLCN4P51793 760 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 EHHADHQ08426 723 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 SMAD4Q13485 552 aaKnown RBP8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 BMS1Q14692 1282 aaKnown RBP8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 SMAD2Q15796 467 aaKnown RBP8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 USP41Q3LFD5 358 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 KMT5BQ4FZB7 885 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 RARS2Q5T160 578 aaKnown RBP8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 SCARA3Q6AZY7 606 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 JADE1Q6IE81 842 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 CNNM4Q6P4Q7 775 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 DCLRE1AQ6PJP8 1040 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 TMC5Q6UXY8 1006 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 EPM2AIP1Q7L775 607 aaPredicted RBP8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 EFCAB13Q8IY85 973 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 SMRP1Q8NCR6 262 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 SCFD1Q8WVM8 642 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 EMILIN2Q9BXX0 1053 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 SLC38A7Q9NVC3 462 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 EXOC7Q9UPT5 735 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 IRAK3Q9Y616 596 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 STYXL1Q9Y6J8 313 aa8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 TDRD15B5MCY1 1934 aaKnown RBP8.34□□□□□ -1.07
HMGB3P1-201ENST00000393368 MYH11P35749 1972 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 TMEM189-UBE2V1I3L0A0 370 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 CLIC2O15247 247 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 TGFB1I1O43294 461 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 TGM5O43548 720 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 RFPL2O75678 378 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 ZNF202O95125 648 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 SRGAP2BP0DMP2 458 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 ABCD1P33897 745 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 MCM4P33991 863 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 ZP2Q05996 745 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 STK4Q13043 487 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 ALCAMQ13740 583 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 TMEM132DQ14C87 1099 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 ZBTB6Q15916 424 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 PSMD5Q16401 504 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 LMBRD2Q68DH5 695 aaPredicted RBP8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 SLFN12LQ6IEE8 588 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 ARMCX5Q6P1M9 558 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 RSPO2Q6UXX9 243 aaPredicted RBP8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 TMEM184AQ6ZMB5 413 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 KRBA2Q6ZNG9 492 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 CBWD2Q8IUF1 395 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 KIAA0895Q8NCT3 520 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 LNX1Q8TBB1 728 aaPredicted RBP8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 CASP10Q92851 521 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 ERCC4Q92889 916 aaPredicted RBP8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 KHSRPQ92945 711 aaKnown RBP eCLIP8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 DDX27Q96GQ7 796 aaKnown RBP8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 FBXL18Q96ME1 805 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 UROC1Q96N76 676 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 CLSTN3Q9BQT9 956 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 PYM1Q9BRP8 204 aaKnown RBP8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 TTPALQ9BTX7 342 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 S1PR5Q9H228 398 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 PLEKHA5Q9HAU0 1116 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 RXFP1Q9HBX9 757 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 MAN1C1Q9NR34 630 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 UBQLN1Q9UMX0 589 aaKnown RBP8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 NUB1Q9Y5A7 615 aa8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 TIMM13Q9Y5L4 95 aaPredicted RBP8.33□□□□□ -1.08
HMGB3P1-201ENST00000393368 PTPRJQ12913 1337 aa8.32□□□□□ -1.08
HMGB3P1-201ENST00000393368 TCF20Q9UGU0 1960 aaKnown RBP8.32□□□□□ -1.08
HMGB3P1-201ENST00000393368 PVALEFA0A1B0GWK0 134 aa8.32□□□□□ -1.08
HMGB3P1-201ENST00000393368 TNFRSF10AO00220 468 aa8.32□□□□□ -1.08
HMGB3P1-201ENST00000393368 SPTLC1O15269 473 aa8.32□□□□□ -1.08
HMGB3P1-201ENST00000393368 MAP3K13O43283 966 aa8.32□□□□□ -1.08
HMGB3P1-201ENST00000393368 EXTL3O43909 919 aa8.32□□□□□ -1.08
HMGB3P1-201ENST00000393368 GADD45BO75293 160 aaPredicted RBP8.32□□□□□ -1.08
HMGB3P1-201ENST00000393368 GLUD1P00367 558 aa8.32□□□□□ -1.08
HMGB3P1-201ENST00000393368 RPN1P04843 607 aaKnown RBP8.32□□□□□ -1.08
HMGB3P1-201ENST00000393368 ADH1AP07327 375 aa8.32□□□□□ -1.08
HMGB3P1-201ENST00000393368 ADRB2P07550 413 aa8.32□□□□□ -1.08
HMGB3P1-201ENST00000393368 GARTP22102 1010 aa8.32□□□□□ -1.08
HMGB3P1-201ENST00000393368 FGFR3P22607 806 aa8.32□□□□□ -1.08
HMGB3P1-201ENST00000393368 SSTR3P32745 418 aaPredicted RBP8.32□□□□□ -1.08
HMGB3P1-201ENST00000393368 RPL9P32969 192 aaKnown RBP8.32□□□□□ -1.08
HMGB3P1-201ENST00000393368 ANP32AP39687 249 aaKnown RBP8.32□□□□□ -1.08
HMGB3P1-201ENST00000393368 CYP2J2P51589 502 aa8.32□□□□□ -1.08
HMGB3P1-201ENST00000393368 CDR1P51861 262 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms