RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CD302Q8IX05 232 aa11.02□□□□□ -0.65
VPS53-202ENST00000389040 C12orf56Q8IXR9 622 aa11.02□□□□□ -0.65
VPS53-202ENST00000389040 SMG8Q8ND04 991 aaKnown RBP11.02□□□□□ -0.65
VPS53-202ENST00000389040 NEK11Q8NG66 645 aa11.02□□□□□ -0.65
VPS53-202ENST00000389040 SP7Q8TDD2 431 aaPredicted RBP11.02□□□□□ -0.65
VPS53-202ENST00000389040 SAMD11Q96NU1 681 aa11.02□□□□□ -0.65
VPS53-202ENST00000389040 YME1L1Q96TA2 773 aa11.02□□□□□ -0.65
VPS53-202ENST00000389040 CCDC94Q9BW85 323 aaPredicted RBP11.02□□□□□ -0.65
VPS53-202ENST00000389040 PLAGL2Q9UPG8 496 aa11.02□□□□□ -0.65
VPS53-202ENST00000389040 TRAF3IP3Q9Y228 551 aa11.02□□□□□ -0.65
VPS53-202ENST00000389040 CTAGE9A4FU28 777 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 EIF3CLB5ME19 914 aaKnown RBP11.01□□□□□ -0.65
VPS53-202ENST00000389040 OGTO15294 1046 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 CALUO43852 315 aaPredicted RBP11.01□□□□□ -0.65
VPS53-202ENST00000389040 IPO7O95373 1038 aaKnown RBP11.01□□□□□ -0.65
VPS53-202ENST00000389040 CLTAP09496 248 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 NR2F2P24468 414 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 HOXD13P35453 343 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 PPP2R3AQ06190 1150 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 ZNF662Q6ZS27 426 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 SLC35F6Q8N357 371 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 URGCPQ8TCY9 931 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 UBXN4Q92575 508 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 EIF3CQ99613 913 aaKnown RBP11.01□□□□□ -0.65
VPS53-202ENST00000389040 EDEM3Q9BZQ6 932 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 HAUS4Q9H6D7 363 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 RSAD1Q9HA92 442 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 RC3H2Q9HBD1 1191 aaKnown RBP11.01□□□□□ -0.65
VPS53-202ENST00000389040 STK39Q9UEW8 545 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.01□□□□□ -0.65
VPS53-202ENST00000389040 TTLL13PA6NNM8 815 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 PRPF6O94906 941 aaKnown RBP11.01□□□□□ -0.65
VPS53-202ENST00000389040 NPTXRO95502 500 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 ATF7P17544 494 aaPredicted RBP11.01□□□□□ -0.65
VPS53-202ENST00000389040 FAM109BQ6ICB4 259 aaPredicted RBP11.01□□□□□ -0.65
VPS53-202ENST00000389040 SLC9A9Q8IVB4 645 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 CCDC42Q96M95 316 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 ACAP3Q96P50 834 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 MSTO1Q9BUK6 570 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 EIF2AQ9BY44 585 aaKnown RBP11.01□□□□□ -0.65
VPS53-202ENST00000389040 CDT1Q9H211 546 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 AAASQ9NRG9 546 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 TYW1Q9NV66 732 aaKnown RBP11.01□□□□□ -0.65
VPS53-202ENST00000389040 COL4A6Q14031 1691 aa11.01□□□□□ -0.65
VPS53-202ENST00000389040 LRRC53A6NM62 1247 aa11□□□□□ -0.65
VPS53-202ENST00000389040 UPP2O95045 317 aa11□□□□□ -0.65
VPS53-202ENST00000389040 EDN1P05305 212 aa11□□□□□ -0.65
VPS53-202ENST00000389040 ADRB2P07550 413 aa11□□□□□ -0.65
VPS53-202ENST00000389040 RPL13P26373 211 aaKnown RBP11□□□□□ -0.65
VPS53-202ENST00000389040 KCNMA1Q12791 1236 aa11□□□□□ -0.65
VPS53-202ENST00000389040 TUBB2AQ13885 445 aa11□□□□□ -0.65
VPS53-202ENST00000389040 XKR4Q5GH76 650 aa11□□□□□ -0.65
VPS53-202ENST00000389040 NOMO2Q5JPE7 1267 aa11□□□□□ -0.65
VPS53-202ENST00000389040 AGMOQ6ZNB7 445 aa11□□□□□ -0.65
VPS53-202ENST00000389040 RRAGAQ7L523 313 aa11□□□□□ -0.65
VPS53-202ENST00000389040 CACNA2D4Q7Z3S7 1137 aa11□□□□□ -0.65
VPS53-202ENST00000389040 FRMD5Q7Z6J6 570 aa11□□□□□ -0.65
VPS53-202ENST00000389040 KIAA1328Q86T90 577 aa11□□□□□ -0.65
VPS53-202ENST00000389040 LRRC43Q8N309 656 aa11□□□□□ -0.65
VPS53-202ENST00000389040 POMGNT1Q8WZA1 660 aa11□□□□□ -0.65
VPS53-202ENST00000389040 BAP1Q92560 729 aa11□□□□□ -0.65
VPS53-202ENST00000389040 CLP1Q92989 425 aaKnown RBP11□□□□□ -0.65
VPS53-202ENST00000389040 CASD1Q96PB1 797 aa11□□□□□ -0.65
VPS53-202ENST00000389040 NAPGQ99747 312 aaPredicted RBP11□□□□□ -0.65
VPS53-202ENST00000389040 TUBB2BQ9BVA1 445 aa11□□□□□ -0.65
VPS53-202ENST00000389040 PLVAPQ9BX97 442 aa11□□□□□ -0.65
VPS53-202ENST00000389040 PBX4Q9BYU1 374 aa11□□□□□ -0.65
VPS53-202ENST00000389040 SLC38A7Q9NVC3 462 aa11□□□□□ -0.65
VPS53-202ENST00000389040 ANKFY1Q9P2R3 1169 aa11□□□□□ -0.65
VPS53-202ENST00000389040 AGO2Q9UKV8 859 aaKnown RBP11□□□□□ -0.65
VPS53-202ENST00000389040 GUCA1BQ9UMX6 200 aa11□□□□□ -0.65
VPS53-202ENST00000389040 CEP290O15078 2479 aa11□□□□□ -0.65
VPS53-202ENST00000389040 RANBP2P49792 3224 aaKnown RBP11□□□□□ -0.65
VPS53-202ENST00000389040 ARL5CA6NH57 179 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 TGFB1I1O43294 461 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 RB1P06400 928 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 ADSSP30520 456 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 MATR3P43243 847 aaKnown RBP eCLIP10.99□□□□□ -0.659e-10■■□□□ 13.9
VPS53-202ENST00000389040 ENPEPQ07075 957 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 KCNA1Q09470 495 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 BTG3Q14201 252 aaPredicted RBP10.99□□□□□ -0.65
VPS53-202ENST00000389040 SURF1Q15526 300 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 CCDC122Q5T0U0 273 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 EEF1DP3Q658K8 133 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 SLC39A4Q6P5W5 647 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 PDXDC1Q6P996 788 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 FBXO38Q6PIJ6 1188 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 ALKAL1Q6UXT8 129 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 NT5DC4Q86YG4 428 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 FIBCD1Q8N539 461 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 EHBP1Q8NDI1 1231 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 JAKMIP2Q96AA8 810 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 FBXL18Q96ME1 805 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 NXF3Q9H4D5 531 aaKnown RBP10.99□□□□□ -0.65
VPS53-202ENST00000389040 ASB7Q9H672 318 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 SLC28A3Q9HAS3 691 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 AGPAT3Q9NRZ7 376 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 CEP72Q9P209 647 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 ARHGAP20Q9P2F6 1191 aa10.99□□□□□ -0.65
VPS53-202ENST00000389040 TRIM10Q9UDY6 481 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms