RNA–Protein interactions for RNA: ENST00000380833.8

CLCN4-202, Transcript of chloride voltage-gated channel 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN4, Length 6,750 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN4-202ENST00000380833 SLC17A8Q8NDX2 589 aa11.32□□□□□ -0.6
CLCN4-202ENST00000380833 DPF3Q92784 378 aa11.32□□□□□ -0.6
CLCN4-202ENST00000380833 ZNF285Q96NJ3 590 aa11.32□□□□□ -0.6
CLCN4-202ENST00000380833 SH2D3AQ9BRG2 576 aa11.32□□□□□ -0.6
CLCN4-202ENST00000380833 TRAPPC8Q9Y2L5 1435 aa11.32□□□□□ -0.6
CLCN4-202ENST00000380833 TSPAN4O14817 238 aa11.32□□□□□ -0.6
CLCN4-202ENST00000380833 KLHL41O60662 606 aa11.32□□□□□ -0.6
CLCN4-202ENST00000380833 CYP2D6P10635 497 aa11.32□□□□□ -0.6
CLCN4-202ENST00000380833 GHRP10912 638 aa11.32□□□□□ -0.6
CLCN4-202ENST00000380833 SMARCA1P28370 1054 aa11.32□□□□□ -0.6
CLCN4-202ENST00000380833 BNC1Q01954 994 aa11.32□□□□□ -0.6
CLCN4-202ENST00000380833 SGSM1Q2NKQ1 1148 aa11.32□□□□□ -0.6
CLCN4-202ENST00000380833 ARL13BQ3SXY8 428 aa11.32□□□□□ -0.6
CLCN4-202ENST00000380833 ZNF568Q3ZCX4 644 aa11.32□□□□□ -0.6
CLCN4-202ENST00000380833 WLSQ5T9L3 541 aa11.32□□□□□ -0.6
CLCN4-202ENST00000380833 ZCCHC7Q8N3Z6 543 aaKnown RBP11.32□□□□□ -0.6
CLCN4-202ENST00000380833 GALNT4Q8N4A0 578 aa11.32□□□□□ -0.6
CLCN4-202ENST00000380833 SH3RF3Q8TEJ3 882 aaPredicted RBP11.32□□□□□ -0.6
CLCN4-202ENST00000380833 SYCP2Q9BX26 1530 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 AREL1O15033 823 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 CIITAP33076 1130 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 GRIK1P39086 918 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 KIAA1755Q5JYT7 1200 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 XPO6Q96QU8 1125 aaKnown RBP11.31□□□□□ -0.6
CLCN4-202ENST00000380833 MRPL1Q9BYD6 325 aaKnown RBP11.31□□□□□ -0.6
CLCN4-202ENST00000380833 STK39Q9UEW8 545 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 LCMT1Q9UIC8 334 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 PNMA3Q9UL41 463 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 E2F8A0AVK6 867 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 ZNF233A6NK53 670 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 PSTPIP1O43586 416 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 PDE9AO76083 593 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 AARSP49588 968 aaKnown RBP eCLIP11.31□□□□□ -0.6
CLCN4-202ENST00000380833 CASP5P51878 434 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 INPP5AQ14642 412 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 KRT31Q15323 416 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 C11orf57Q6ZUT1 292 aaPredicted RBP11.31□□□□□ -0.6
CLCN4-202ENST00000380833 RBM12BQ8IXT5 1001 aaKnown RBP11.31□□□□□ -0.6
CLCN4-202ENST00000380833 SYTL5Q8TDW5 730 aaPredicted RBP11.31□□□□□ -0.6
CLCN4-202ENST00000380833 EAF2Q96CJ1 260 aaPredicted RBP11.31□□□□□ -0.6
CLCN4-202ENST00000380833 C8orf4Q9NR00 106 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 SPATA7Q9P0W8 599 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 MED7O43513 233 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 FSBPO95073 299 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 RTN3O95197 1032 aaPredicted RBP11.31□□□□□ -0.6
CLCN4-202ENST00000380833 AFPP02771 609 aaKnown RBP11.31□□□□□ -0.6
CLCN4-202ENST00000380833 CHRNA5P30532 468 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 RFX3P48380 749 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 BNIP1Q12981 228 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 NR5A1Q13285 461 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 AGBL2Q5U5Z8 902 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 ANKRD40Q6AI12 368 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 MTBPQ96DY7 904 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 FHOD1Q9Y613 1164 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 TMEM247A6NEH6 219 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 ERVV-2B6SEH9 535 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 IST1P53990 364 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 SLC10A5Q5PT55 438 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 HERC5Q9UII4 1024 aaKnown RBP11.31□□□□□ -0.6
CLCN4-202ENST00000380833 TTC7AQ9ULT0 858 aaPredicted RBP11.31□□□□□ -0.6
CLCN4-202ENST00000380833 ATP10BO94823 1461 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 ANO9A1A5B4 782 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 TNPO2O14787 897 aaKnown RBP11.31□□□□□ -0.6
CLCN4-202ENST00000380833 PSMC3P17980 439 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 COBLL1Q53SF7 1204 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 MICU2Q8IYU8 434 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 ZBTB8BQ8NAP8 495 aaPredicted RBP11.31□□□□□ -0.6
CLCN4-202ENST00000380833 TTC17Q96AE7 1141 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 CMTM5Q96DZ9 223 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 CEP44Q9C0F1 390 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 CYLDQ9NQC7 956 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 ADAMTS12P58397 1594 aa11.31□□□□□ -0.6
CLCN4-202ENST00000380833 USP27XA6NNY8 438 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 ECE2O60344 883 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 CSE1LP55060 971 aaKnown RBP11.3□□□□□ -0.6
CLCN4-202ENST00000380833 ZNF579Q8NAF0 562 aaKnown RBP11.3□□□□□ -0.6
CLCN4-202ENST00000380833 KCNK16Q96T55 309 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 CACNA2D2Q9NY47 1150 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 KIAA0232Q92628 1395 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 CHN1P15882 459 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 MFSD14CQ5VZR4 134 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 KCTD4Q8WVF5 259 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 RBM41Q96IZ5 413 aaKnown RBP11.3□□□□□ -0.6
CLCN4-202ENST00000380833 BTBD6Q96KE9 485 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 SPATA33Q96N06 139 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 SP110Q9HB58 689 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 PCDHA4Q9UN74 947 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 A0A0G2JLW4 131 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 SAC3D1A6NKF1 404 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 NDUFA10O95299 355 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 ACSL3O95573 720 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 BRAFP15056 766 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 EPB42P16452 691 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 CYP2B6P20813 491 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 OASLQ15646 514 aaKnown RBP11.3□□□□□ -0.6
CLCN4-202ENST00000380833 HIF1AQ16665 826 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 NDUFAF2Q8N183 169 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 ULK4Q96C45 1275 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 FAM213AQ9BRX8 229 aa11.3□□□□□ -0.6
CLCN4-202ENST00000380833 ADAM33Q9BZ11 813 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms