RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 SNX8Q9Y5X2 465 aa13.06□□□□□ -0.32
CHD3-203ENST00000380358 MYO1CO00159 1063 aa13.06□□□□□ -0.32
CHD3-203ENST00000380358 NDUFA10O95299 355 aa13.06□□□□□ -0.32
CHD3-203ENST00000380358 YWHAQP27348 245 aa13.06□□□□□ -0.32
CHD3-203ENST00000380358 GUCY1A2P33402 732 aa13.06□□□□□ -0.32
CHD3-203ENST00000380358 CNGA2Q16280 664 aa13.06□□□□□ -0.32
CHD3-203ENST00000380358 SENP2Q9HC62 589 aa13.06□□□□□ -0.32
CHD3-203ENST00000380358 PSD3Q9NYI0 1048 aa13.06□□□□□ -0.32
CHD3-203ENST00000380358 TRIM10Q9UDY6 481 aa13.06□□□□□ -0.32
CHD3-203ENST00000380358 PCDH8O95206 1070 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 PTPN7P35236 360 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 SMTNL2Q2TAL5 461 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 TRIM62Q9BVG3 475 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 PARD6BQ9BYG5 372 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 FOXP1Q9H334 677 aaPredicted RBP13.05□□□□□ -0.32
CHD3-203ENST00000380358 ACTR5Q9H9F9 607 aaPredicted RBP13.05□□□□□ -0.32
CHD3-203ENST00000380358 XPO1O14980 1071 aaKnown RBP13.05□□□□□ -0.32
CHD3-203ENST00000380358 MMP1P03956 469 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 KRT39Q6A163 491 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 NT5DC4Q86YG4 428 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 ASAP3Q8TDY4 903 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 BFARQ9NZS9 450 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 TIAM1Q13009 1591 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 LAD1O00515 517 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 NR3C1P04150 777 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 GALNTL6Q49A17 601 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 BBOX1O75936 387 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 RASGRF1Q13972 1273 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 NFIL3Q16649 462 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 UNC45BQ8IWX7 931 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 CARNMT1Q8N4J0 409 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 MASTLQ96GX5 879 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 AK8Q96MA6 479 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 PNMA5Q96PV4 448 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 EPN3Q9H201 632 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 MAP3K6O95382 1288 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 RALBP11234 206 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 CAPRIN2Q6IMN6 1127 aaKnown RBP13.05□□□□□ -0.32
CHD3-203ENST00000380358 SARM1Q6SZW1 724 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 NPHS2Q9NP85 383 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 GALNT8Q9NY28 637 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 POLG2Q9UHN1 485 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 ALDH9A1P49189 494 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 RBBP4Q09028 425 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 CNGA3Q16281 694 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 GIMAP8Q8ND71 665 aaPredicted RBP13.05□□□□□ -0.32
CHD3-203ENST00000380358 ACSF2Q96CM8 615 aaPredicted RBP13.05□□□□□ -0.32
CHD3-203ENST00000380358 COPS7BQ9H9Q2 264 aaPredicted RBP13.05□□□□□ -0.32
CHD3-203ENST00000380358 ZFATQ9P243 1243 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 ATP6V1HQ9UI12 483 aa13.05□□□□□ -0.32
CHD3-203ENST00000380358 SMNDC1O75940 238 aaKnown RBP eCLIP13.04□□□□□ -0.323e-14■■■■■ 30
CHD3-203ENST00000380358 RAD23BP54727 409 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 ACTR2P61160 394 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 TFDP2Q14188 446 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 USP6NLQ92738 828 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 RPS6KA5O75582 802 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 ORC1Q13415 861 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 CDH18Q13634 790 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 WDR72Q3MJ13 1102 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 CCDC149Q6ZUS6 474 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 CCDC60Q8IWA6 550 aaPredicted RBP13.04□□□□□ -0.32
CHD3-203ENST00000380358 NSUN6Q8TEA1 469 aaKnown RBP13.04□□□□□ -0.32
CHD3-203ENST00000380358 CLIP3Q96DZ5 547 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 SGF29Q96ES7 293 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 VTI1BQ9UEU0 232 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 SLC9A8Q9Y2E8 581 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 ZMYM3Q14202 1370 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 CALB1P05937 261 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 PMS2P54278 862 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 AHCYL2Q96HN2 611 aaKnown RBP13.04□□□□□ -0.32
CHD3-203ENST00000380358 CCDC3Q9BQI4 270 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 PCMTD2Q9NV79 361 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 ZNF335Q9H4Z2 1342 aaPredicted RBP13.04□□□□□ -0.32
CHD3-203ENST00000380358 SH3BGRLO75368 114 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 GCFC2P16383 781 aaKnown RBP13.04□□□□□ -0.32
CHD3-203ENST00000380358 GTF2E2P29084 291 aaKnown RBP13.04□□□□□ -0.32
CHD3-203ENST00000380358 ADD2P35612 726 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 RWDD2AQ9UIY3 292 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 CPSF4O95639 269 aaKnown RBP13.04□□□□□ -0.32
CHD3-203ENST00000380358 ABCB1P08183 1280 aaPredicted RBP13.04□□□□□ -0.32
CHD3-203ENST00000380358 ADRA2BP18089 450 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 XXYLT1Q8NBI6 393 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 SCFD1Q8WVM8 642 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 LXNQ9BS40 222 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 CNOT10Q9H9A5 744 aaKnown RBP13.04□□□□□ -0.32
CHD3-203ENST00000380358 NAGPAQ9UK23 515 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 A8MX80 341 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 TRIM25Q14258 630 aaKnown RBP13.04□□□□□ -0.32
CHD3-203ENST00000380358 NFRKBQ6P4R8 1299 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 FOXP4Q8IVH2 680 aaPredicted RBP13.04□□□□□ -0.32
CHD3-203ENST00000380358 STKLD1Q8NE28 680 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 FEM1BQ9UK73 627 aa13.04□□□□□ -0.32
CHD3-203ENST00000380358 AGO2Q9UKV8 859 aaKnown RBP13.04□□□□□ -0.32
CHD3-203ENST00000380358 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.03□□□□□ -0.32
CHD3-203ENST00000380358 CAND2O75155 1236 aa13.03□□□□□ -0.32
CHD3-203ENST00000380358 ITGB6P18564 788 aa13.03□□□□□ -0.32
CHD3-203ENST00000380358 AP3B2Q13367 1082 aa13.03□□□□□ -0.32
CHD3-203ENST00000380358 STN1Q9H668 368 aaKnown RBP13.03□□□□□ -0.32
CHD3-203ENST00000380358 PEX1O43933 1283 aa13.03□□□□□ -0.32
CHD3-203ENST00000380358 TPST1O60507 370 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms