RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 AMACRQ9UHK6 382 aa23.08■■□□□ 1.29
TRIM54-202ENST00000380075 SIP14410 1827 aa23.08■■□□□ 1.29
TRIM54-202ENST00000380075 FAM187AA6NFU0 413 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 A6NNZ2 444 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 SORBS3O60504 671 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 HOXC6P09630 235 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 ECHS1P30084 290 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 DHX34Q14147 1143 aaKnown RBP23.07■■□□□ 1.28
TRIM54-202ENST00000380075 TUBB8Q3ZCM7 444 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 TATDN2Q93075 761 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 ZBTB9Q96C00 473 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 ZNF653Q96CK0 615 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 FAM167AQ96KS9 214 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 PTPN22Q9Y2R2 807 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 PLXNB2O15031 1838 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 GSTTP1A0A1W2PQM5 241 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 SOWAHBA6NEL2 793 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 LRRIQ4A6NIV6 560 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 C4BPAP04003 597 aaKnown RBP23.07■■□□□ 1.28
TRIM54-202ENST00000380075 CTNNA2P26232 953 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 GUCY2FP51841 1108 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 CCL14Q16627 93 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 ZSCAN26Q16670 478 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 CLEC16AQ2KHT3 1053 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 METTL7BQ6UX53 244 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 LRIG3Q6UXM1 1119 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 RAET1EQ8TD07 263 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 ALG3Q92685 438 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 TRIM11Q96F44 468 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 FGD4Q96M96 766 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 APBA2Q99767 749 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 NUP85Q9BW27 656 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 PLEKHA4Q9H4M7 779 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 CWC15Q9P013 229 aaKnown RBP23.07■■□□□ 1.28
TRIM54-202ENST00000380075 TRPC6Q9Y210 931 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 PCDHB2Q9Y5E7 798 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 PTCH2Q9Y6C5 1203 aa23.07■■□□□ 1.28
TRIM54-202ENST00000380075 IVLP07476 585 aa23.06■■□□□ 1.28
TRIM54-202ENST00000380075 TNNI1P19237 187 aa23.06■■□□□ 1.28
TRIM54-202ENST00000380075 PRMT2P55345 433 aa23.06■■□□□ 1.28
TRIM54-202ENST00000380075 MTMR3Q13615 1198 aa23.06■■□□□ 1.28
TRIM54-202ENST00000380075 KCNV1Q6PIU1 500 aa23.06■■□□□ 1.28
TRIM54-202ENST00000380075 EFCAB13Q8IY85 973 aa23.06■■□□□ 1.28
TRIM54-202ENST00000380075 EXOC8Q8IYI6 725 aa23.06■■□□□ 1.28
TRIM54-202ENST00000380075 SEPT1Q8WYJ6 367 aa23.06■■□□□ 1.28
TRIM54-202ENST00000380075 ZNF516Q92618 1163 aa23.06■■□□□ 1.28
TRIM54-202ENST00000380075 CD101Q93033 1021 aa23.06■■□□□ 1.28
TRIM54-202ENST00000380075 MAML3Q96JK9 1138 aa23.06■■□□□ 1.28
TRIM54-202ENST00000380075 FLRT1Q9NZU1 646 aa23.06■■□□□ 1.28
TRIM54-202ENST00000380075 GAS2O43903 313 aaKnown RBP23.05■■□□□ 1.28
TRIM54-202ENST00000380075 MYBL1P10243 752 aa23.05■■□□□ 1.28
TRIM54-202ENST00000380075 KRT5P13647 590 aa23.05■■□□□ 1.28
TRIM54-202ENST00000380075 COMTP21964 271 aa23.05■■□□□ 1.28
TRIM54-202ENST00000380075 STAT5BP51692 787 aa23.05■■□□□ 1.28
TRIM54-202ENST00000380075 IRF5Q13568 498 aa23.05■■□□□ 1.28
TRIM54-202ENST00000380075 MESDQ14696 234 aa23.05■■□□□ 1.28
TRIM54-202ENST00000380075 SEL1L2Q5TEA6 688 aa23.05■■□□□ 1.28
TRIM54-202ENST00000380075 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.05■■□□□ 1.28
TRIM54-202ENST00000380075 SLC5A4Q9NY91 659 aa23.05■■□□□ 1.28
TRIM54-202ENST00000380075 A0A0B4J269 797 aa23.05■■□□□ 1.28
TRIM54-202ENST00000380075 TULP1O00294 542 aaPredicted RBP23.05■■□□□ 1.28
TRIM54-202ENST00000380075 TTI1O43156 1089 aa23.05■■□□□ 1.28
TRIM54-202ENST00000380075 SHOX2O60902 331 aaPredicted RBP23.05■■□□□ 1.28
TRIM54-202ENST00000380075 HLA-DRAP01903 254 aa23.05■■□□□ 1.28
TRIM54-202ENST00000380075 PIK3CAP42336 1068 aa23.05■■□□□ 1.28
TRIM54-202ENST00000380075 PEX5P50542 639 aa23.05■■□□□ 1.28
TRIM54-202ENST00000380075 NLRP11P59045 1033 aaKnown RBP23.05■■□□□ 1.28
TRIM54-202ENST00000380075 RUNDC3BQ96NL0 473 aa23.05■■□□□ 1.28
TRIM54-202ENST00000380075 PCYT2Q99447 389 aa23.05■■□□□ 1.28
TRIM54-202ENST00000380075 AVENQ9NQS1 362 aaPredicted RBP23.05■■□□□ 1.28
TRIM54-202ENST00000380075 RBAKQ9NYW8 714 aaPredicted RBP23.05■■□□□ 1.28
TRIM54-202ENST00000380075 ELNP15502 786 aa23.04■■□□□ 1.28
TRIM54-202ENST00000380075 CHRNA3P32297 505 aa23.04■■□□□ 1.28
TRIM54-202ENST00000380075 CTNNA1P35221 906 aaKnown RBP23.04■■□□□ 1.28
TRIM54-202ENST00000380075 EFNA5P52803 228 aa23.04■■□□□ 1.28
TRIM54-202ENST00000380075 TRADDQ15628 312 aa23.04■■□□□ 1.28
TRIM54-202ENST00000380075 SMYD5Q6GMV2 418 aa23.04■■□□□ 1.28
TRIM54-202ENST00000380075 PPP1R2P3Q6NXS1 205 aa23.04■■□□□ 1.28
TRIM54-202ENST00000380075 CRELD2Q6UXH1 353 aaPredicted RBP23.04■■□□□ 1.28
TRIM54-202ENST00000380075 ZPBP2Q6X784 338 aa23.04■■□□□ 1.28
TRIM54-202ENST00000380075 PIK3R5Q8WYR1 880 aa23.04■■□□□ 1.28
TRIM54-202ENST00000380075 CGRRF1Q99675 332 aa23.04■■□□□ 1.28
TRIM54-202ENST00000380075 MSTO1Q9BUK6 570 aa23.04■■□□□ 1.28
TRIM54-202ENST00000380075 RASAL2Q9UJF2 1139 aa23.04■■□□□ 1.28
TRIM54-202ENST00000380075 ADCY3O60266 1144 aa23.03■■□□□ 1.28
TRIM54-202ENST00000380075 MAFO75444 373 aaPredicted RBP23.03■■□□□ 1.28
TRIM54-202ENST00000380075 AP3M2P53677 418 aa23.03■■□□□ 1.28
TRIM54-202ENST00000380075 HNRNPH2P55795 449 aaKnown RBP23.03■■□□□ 1.28
TRIM54-202ENST00000380075 DR1Q01658 176 aa23.03■■□□□ 1.28
TRIM54-202ENST00000380075 SPDYCQ5MJ68 293 aa23.03■■□□□ 1.28
TRIM54-202ENST00000380075 TRIB2Q92519 343 aa23.03■■□□□ 1.28
TRIM54-202ENST00000380075 PLVAPQ9BX97 442 aa23.03■■□□□ 1.28
TRIM54-202ENST00000380075 ACP6Q9NPH0 428 aa23.03■■□□□ 1.28
TRIM54-202ENST00000380075 PCDHA3Q9Y5H8 950 aa23.03■■□□□ 1.28
TRIM54-202ENST00000380075 ZNF236Q9UL36 1845 aa23.03■■□□□ 1.28
TRIM54-202ENST00000380075 SPOPO43791 374 aa23.03■■□□□ 1.28
TRIM54-202ENST00000380075 PHF2O75151 1096 aa23.03■■□□□ 1.28
TRIM54-202ENST00000380075 TBXAS1P24557 533 aaPredicted RBP23.03■■□□□ 1.28
TRIM54-202ENST00000380075 GBP1P32455 592 aa23.03■■□□□ 1.28
TRIM54-202ENST00000380075 DRG2P55039 364 aaKnown RBP23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms