RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 ASB7Q9H672 318 aa14.51□□□□□ -0.09
VPS28-202ENST00000377348 UBE2ZQ9H832 354 aaPredicted RBP14.51□□□□□ -0.09
VPS28-202ENST00000377348 CHST7Q9NS84 486 aa14.51□□□□□ -0.09
VPS28-202ENST00000377348 RBAKQ9NYW8 714 aaPredicted RBP14.51□□□□□ -0.09
VPS28-202ENST00000377348 UBQLN1Q9UMX0 589 aaKnown RBP14.51□□□□□ -0.09
VPS28-202ENST00000377348 PDCD11Q14690 1871 aaKnown RBP14.5□□□□□ -0.09
VPS28-202ENST00000377348 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.5□□□□□ -0.09
VPS28-202ENST00000377348 H3BQ06 376 aaPredicted RBP14.5□□□□□ -0.09
VPS28-202ENST00000377348 TMEM189-UBE2V1I3L0A0 370 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 LILRB3O75022 631 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 GLP2RO95838 553 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 CNPP09543 421 aaKnown RBP14.5□□□□□ -0.09
VPS28-202ENST00000377348 CYP3A5P20815 502 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 KCNA5P22460 613 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 LTBRP36941 435 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 GLUD2P49448 558 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 DSG1Q02413 1049 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 ADAM15Q13444 863 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 BMS1Q14692 1282 aaKnown RBP14.5□□□□□ -0.09
VPS28-202ENST00000377348 COL19A1Q14993 1142 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 CTC1Q2NKJ3 1217 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 USP41Q3LFD5 358 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 FAM171A1Q5VUB5 890 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 KIAA0319Q5VV43 1072 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 ISM2Q6H9L7 571 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 CEP57Q86XR8 500 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 EFHBQ8N7U6 833 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 RDH13Q8NBN7 331 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 RIN2Q8WYP3 895 aaPredicted RBP14.5□□□□□ -0.09
VPS28-202ENST00000377348 SMARCE1Q969G3 411 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 DDX27Q96GQ7 796 aaKnown RBP14.5□□□□□ -0.09
VPS28-202ENST00000377348 KCTD10Q9H3F6 313 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 PDE11AQ9HCR9 933 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 MRPL17Q9NRX2 175 aaKnown RBP14.5□□□□□ -0.09
VPS28-202ENST00000377348 STK39Q9UEW8 545 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 COG5Q9UP83 839 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 IRAK3Q9Y616 596 aa14.5□□□□□ -0.09
VPS28-202ENST00000377348 ANK1P16157 1881 aa14.49□□□□□ -0.09
VPS28-202ENST00000377348 KIAA0391O15091 583 aaKnown RBP14.49□□□□□ -0.09
VPS28-202ENST00000377348 CLASP2O75122 1294 aaKnown RBP14.49□□□□□ -0.09
VPS28-202ENST00000377348 TBX10O75333 385 aa14.49□□□□□ -0.09
VPS28-202ENST00000377348 IL18RAPO95256 599 aa14.49□□□□□ -0.09
VPS28-202ENST00000377348 SMC2O95347 1197 aa14.49□□□□□ -0.09
VPS28-202ENST00000377348 RPL17P18621 184 aaKnown RBP14.49□□□□□ -0.09
VPS28-202ENST00000377348 TKTP29401 623 aaKnown RBP14.49□□□□□ -0.09
VPS28-202ENST00000377348 LRPAP1P30533 357 aa14.49□□□□□ -0.09
VPS28-202ENST00000377348 RPL9P32969 192 aaKnown RBP14.49□□□□□ -0.09
VPS28-202ENST00000377348 POU5F1Q01860 360 aaKnown RBP14.49□□□□□ -0.09
VPS28-202ENST00000377348 CLUL1Q15846 466 aa14.49□□□□□ -0.09
VPS28-202ENST00000377348 SPATA1Q5VX52 437 aa14.49□□□□□ -0.09
VPS28-202ENST00000377348 LMBRD2Q68DH5 695 aaPredicted RBP14.49□□□□□ -0.09
VPS28-202ENST00000377348 KIAA1841Q6NSI8 718 aa14.49□□□□□ -0.09
VPS28-202ENST00000377348 PRSS55Q6UWB4 352 aaPredicted RBP14.49□□□□□ -0.09
VPS28-202ENST00000377348 XXYLT1Q8NBI6 393 aa14.49□□□□□ -0.09
VPS28-202ENST00000377348 BEST2Q8NFU1 509 aa14.49□□□□□ -0.09
VPS28-202ENST00000377348 SPATA20Q8TB22 786 aa14.49□□□□□ -0.09
VPS28-202ENST00000377348 KLHL5Q96PQ7 755 aa14.49□□□□□ -0.09
VPS28-202ENST00000377348 HOOK1Q9UJC3 728 aaKnown RBP14.49□□□□□ -0.09
VPS28-202ENST00000377348 BARX2Q9UMQ3 279 aaPredicted RBP14.49□□□□□ -0.09
VPS28-202ENST00000377348 DERAQ9Y315 318 aa14.49□□□□□ -0.09
VPS28-202ENST00000377348 C2CD2Q9Y426 696 aa14.49□□□□□ -0.09
VPS28-202ENST00000377348 PTPRJQ12913 1337 aa14.48□□□□□ -0.09
VPS28-202ENST00000377348 ZNF233A6NK53 670 aa14.48□□□□□ -0.09
VPS28-202ENST00000377348 XPOTO43592 962 aaKnown RBP14.48□□□□□ -0.09
VPS28-202ENST00000377348 NCK2O43639 380 aa14.48□□□□□ -0.09
VPS28-202ENST00000377348 NDUFV1P49821 464 aa14.48□□□□□ -0.09
VPS28-202ENST00000377348 KCNQ1P51787 676 aa14.48□□□□□ -0.09
VPS28-202ENST00000377348 SNRPFP62306 86 aaKnown RBP14.48□□□□□ -0.09
VPS28-202ENST00000377348 TFAMQ00059 246 aaKnown RBP14.48□□□□□ -0.09
VPS28-202ENST00000377348 SNRNP35Q16560 246 aaKnown RBP14.48□□□□□ -0.09
VPS28-202ENST00000377348 CAMK4Q16566 473 aa14.48□□□□□ -0.09
VPS28-202ENST00000377348 SCARA3Q6AZY7 606 aa14.48□□□□□ -0.09
VPS28-202ENST00000377348 GLYCTKQ8IVS8 523 aa14.48□□□□□ -0.09
VPS28-202ENST00000377348 C12orf56Q8IXR9 622 aa14.48□□□□□ -0.09
VPS28-202ENST00000377348 ELOA2Q8IYF1 753 aaPredicted RBP14.48□□□□□ -0.09
VPS28-202ENST00000377348 GUF1Q8N442 669 aaKnown RBP14.48□□□□□ -0.09
VPS28-202ENST00000377348 FBXL18Q96ME1 805 aa14.48□□□□□ -0.09
VPS28-202ENST00000377348 GSDMAQ96QA5 445 aa14.48□□□□□ -0.09
VPS28-202ENST00000377348 TSPAN18Q96SJ8 248 aa14.48□□□□□ -0.09
VPS28-202ENST00000377348 CDCA3Q99618 268 aaPredicted RBP14.48□□□□□ -0.09
VPS28-202ENST00000377348 TTPALQ9BTX7 342 aa14.48□□□□□ -0.09
VPS28-202ENST00000377348 LMBRD1Q9NUN5 540 aa14.48□□□□□ -0.09
VPS28-202ENST00000377348 RMND1Q9NWS8 449 aa14.48□□□□□ -0.09
VPS28-202ENST00000377348 CLEC1BQ9P126 229 aa14.48□□□□□ -0.09
VPS28-202ENST00000377348 CGNQ9P2M7 1197 aaKnown RBP14.48□□□□□ -0.09
VPS28-202ENST00000377348 MAN1B1Q9UKM7 699 aa14.48□□□□□ -0.09
VPS28-202ENST00000377348 NUB1Q9Y5A7 615 aa14.48□□□□□ -0.09
VPS28-202ENST00000377348 HCFC2Q9Y5Z7 792 aa14.48□□□□□ -0.09
VPS28-202ENST00000377348 PDXKO00764 312 aa14.47□□□□□ -0.09
VPS28-202ENST00000377348 TEX28O15482 410 aa14.47□□□□□ -0.09
VPS28-202ENST00000377348 EXOC3O60645 756 aa14.47□□□□□ -0.09
VPS28-202ENST00000377348 EPCAMP16422 314 aa14.47□□□□□ -0.09
VPS28-202ENST00000377348 FGFR3P22607 806 aa14.47□□□□□ -0.09
VPS28-202ENST00000377348 KLRC2P26717 231 aa14.47□□□□□ -0.09
VPS28-202ENST00000377348 MCM4P33991 863 aa14.47□□□□□ -0.09
VPS28-202ENST00000377348 PRCPP42785 496 aa14.47□□□□□ -0.09
VPS28-202ENST00000377348 ELAVL2Q12926 359 aaKnown RBP14.47□□□□□ -0.09
VPS28-202ENST00000377348 KCNC3Q14003 757 aa14.47□□□□□ -0.09
VPS28-202ENST00000377348 ZNF658Q5TYW1 1059 aaPredicted RBP14.47□□□□□ -0.09
VPS28-202ENST00000377348 C9orf57Q5W0N0 161 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms