RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 SESN2P58004 480 aaPredicted RBP12.04□□□□□ -0.48
PTPRF-203ENST00000372407 HIC1Q14526 733 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 KYAT1Q16773 422 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 AGGF1Q8N302 714 aaeCLIP12.04□□□□□ -0.48
PTPRF-203ENST00000372407 USP38Q8NB14 1042 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 KIF12Q96FN5 646 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 ZNF560Q96MR9 790 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 ZIM3Q96PE6 472 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 PDGFRAP16234 1089 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 SNRNP35Q16560 246 aaKnown RBP12.04□□□□□ -0.48
PTPRF-203ENST00000372407 P3H1Q32P28 736 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 TRAPPC11Q7Z392 1133 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 SYN2Q92777 582 aaPredicted RBP12.04□□□□□ -0.48
PTPRF-203ENST00000372407 SENP7Q9BQF6 1050 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 SH2D3AQ9BRG2 576 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 SIK2Q9H0K1 926 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 SENP2Q9HC62 589 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 ZNRF3Q9ULT6 936 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 PHLPP1O60346 1717 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 STILQ15468 1287 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 IMPG1Q17R60 797 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 ISCUQ9H1K1 167 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 RAB6BQ9NRW1 208 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 NEU2Q9Y3R4 380 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 CNTNAP5Q8WYK1 1306 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 PXDNQ92626 1479 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 ANP32DO95626 131 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 RASA1P20936 1047 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 ADORA2BP29275 332 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 TGFB2P61812 414 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 DYNC1I2Q13409 638 aaKnown RBP12.04□□□□□ -0.48
PTPRF-203ENST00000372407 CAPRIN1Q14444 709 aaKnown RBP12.04□□□□□ -0.48
PTPRF-203ENST00000372407 RAPGEF5Q92565 580 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 SPATA33Q96N06 139 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 GCNAQ96QF7 691 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 CARD9Q9H257 536 aa12.04□□□□□ -0.48
PTPRF-203ENST00000372407 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.04□□□□□ -0.48
PTPRF-203ENST00000372407 RASSF10A6NK89 507 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 PPP1R3GB7ZBB8 358 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 F5H423 210 aaPredicted RBP12.03□□□□□ -0.48
PTPRF-203ENST00000372407 NTSR2O95665 410 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 PDHBP11177 359 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 RFX5P48382 616 aaPredicted RBP12.03□□□□□ -0.48
PTPRF-203ENST00000372407 ACOT2P49753 483 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 HSD17B4P51659 736 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 NME3Q13232 169 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 PIGHQ14442 188 aaPredicted RBP12.03□□□□□ -0.48
PTPRF-203ENST00000372407 KYNUQ16719 465 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 LONRF1Q17RB8 773 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 OR2W6PQ8NHA6 318 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 SNX19Q92543 992 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 CYFIP2Q96F07 1278 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 TRIM62Q9BVG3 475 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 TSSK1BQ9BXA7 367 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 SMARCAL1Q9NZC9 954 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 GGT7Q9UJ14 662 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 SLC4A7Q9Y6M7 1214 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 CAMTA1Q9Y6Y1 1673 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 ATP9BO43861 1147 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 PRKCBP05771 671 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 COMTP21964 271 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 KDSRQ06136 332 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 TROAPQ12815 778 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 NCOA4Q13772 614 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 RASSF3Q86WH2 238 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 REXO1L1PQ8IX06 675 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 C2orf69Q8N8R5 385 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 ARMC2Q8NEN0 867 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 RNF217Q8TC41 542 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 SEC16BQ96JE7 1060 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 SPON2Q9BUD6 331 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 TMEM117Q9H0C3 514 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 PSMC3IPQ9P2W1 217 aaPredicted RBP12.03□□□□□ -0.48
PTPRF-203ENST00000372407 ZC3H7BQ9UGR2 993 aaKnown RBP12.03□□□□□ -0.48
PTPRF-203ENST00000372407 DBR1Q9UK59 544 aaKnown RBP12.03□□□□□ -0.48
PTPRF-203ENST00000372407 HPS5Q9UPZ3 1129 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 TRIM66O15016 1216 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 KCNN4O15554 427 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 FAM107AO95990 144 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 MYL3P08590 195 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 FXR2P51116 673 aaKnown RBP eCLIP12.03□□□□□ -0.48
PTPRF-203ENST00000372407 CDK17Q00537 523 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 GRIN1Q05586 938 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 CUL3Q13618 768 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 RNF135Q8IUD6 432 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 RBBP8NLQ8NC74 664 aaPredicted RBP12.03□□□□□ -0.48
PTPRF-203ENST00000372407 TBC1D16Q8TBP0 767 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 CPA5Q8WXQ8 436 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 IL17RAQ96F46 866 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 EPAS1Q99814 870 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 ASPSCR1Q9BZE9 553 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 SLC24A3Q9HC58 644 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 BATF3Q9NR55 127 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 P4HA2O15460 535 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 MYBP10242 640 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 COPB2P35606 906 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 STX3Q13277 289 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 FBXW10Q5XX13 1052 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 GRAMD4Q6IC98 578 aa12.03□□□□□ -0.48
PTPRF-203ENST00000372407 KCNV1Q6PIU1 500 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms