RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 GID8Q9NWU2 228 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 TMEM161AQ9NX61 479 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 RGL1Q9NZL6 768 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 PRR23D1E9PI22 279 aaPredicted RBP6.79□□□□□ -1.32
UPF2-201ENST00000356352 EEF2KO00418 725 aaKnown RBP6.79□□□□□ -1.32
UPF2-201ENST00000356352 KLHL2O95198 593 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 PRR23D2P0DMB1 279 aaPredicted RBP6.79□□□□□ -1.32
UPF2-201ENST00000356352 CYP2D6P10635 497 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 TCF3P15923 654 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 AKT1P31749 480 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 PTK6Q13882 451 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 ARHGAP15Q53QZ3 475 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 UGT3A1Q6NUS8 523 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 ADCK1Q86TW2 530 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 ZNF677Q86XU0 584 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 RIBC1Q8N443 379 aaPredicted RBP6.79□□□□□ -1.32
UPF2-201ENST00000356352 VPS37AQ8NEZ2 397 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 NEDD1Q8NHV4 660 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 ELMO2Q96JJ3 720 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 AIFM3Q96NN9 605 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 PRPF18Q99633 342 aaKnown RBP6.79□□□□□ -1.32
UPF2-201ENST00000356352 FRMD8Q9BZ67 464 aaPredicted RBP6.79□□□□□ -1.32
UPF2-201ENST00000356352 UNC45AQ9H3U1 944 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 ETNK1Q9HBU6 452 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 PSMC3IPQ9P2W1 217 aaPredicted RBP6.79□□□□□ -1.32
UPF2-201ENST00000356352 CDYLQ9Y232 598 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 ATP11BQ9Y2G3 1177 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 ARL2BPQ9Y2Y0 163 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 SAMD9LQ8IVG5 1584 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 ATP9BO43861 1147 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 SRGAP2O75044 1071 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 LARGE1O95461 756 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 E4F1Q66K89 784 aaPredicted RBP6.79□□□□□ -1.32
UPF2-201ENST00000356352 CYB5R4Q7L1T6 521 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 SPATA21Q7Z572 469 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 GAS2L3Q86XJ1 694 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 FMR1NBQ8N0W7 255 aaPredicted RBP6.79□□□□□ -1.32
UPF2-201ENST00000356352 PTPRN2Q92932 1015 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 RBBP8Q99708 897 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 STK33Q9BYT3 514 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 RANBP17Q9H2T7 1088 aaKnown RBP6.79□□□□□ -1.32
UPF2-201ENST00000356352 TRPC7Q9HCX4 862 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 UBXN8O00124 270 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 GUCA1CO95843 209 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 MYL2P10916 166 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 NCALDP61601 193 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 BYSLQ13895 437 aaKnown RBP6.79□□□□□ -1.32
UPF2-201ENST00000356352 PDK1Q15118 436 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 HIST2H2ACQ16777 129 aaPredicted RBP6.79□□□□□ -1.32
UPF2-201ENST00000356352 HIST2H2AA3Q6FI13 130 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 NFRKBQ6P4R8 1299 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 OOSP2Q86WS3 158 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 PLD3Q8IV08 490 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 ELOA2Q8IYF1 753 aaPredicted RBP6.79□□□□□ -1.32
UPF2-201ENST00000356352 THOC1Q96FV9 657 aaKnown RBP6.79□□□□□ -1.32
UPF2-201ENST00000356352 OTUD5Q96G74 571 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 TRABDQ9H4I3 376 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 PAK5Q9P286 719 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 SH3BP1Q9Y3L3 701 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 H2AFYO75367 372 aaKnown RBP6.79□□□□□ -1.32
UPF2-201ENST00000356352 TXNP10599 105 aaKnown RBP6.79□□□□□ -1.32
UPF2-201ENST00000356352 PYGMP11217 842 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 PCSK1P29120 753 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 SPRP35270 261 aaPredicted RBP6.79□□□□□ -1.32
UPF2-201ENST00000356352 PGM1P36871 562 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 RUNX1T1Q06455 604 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 SPP2Q13103 211 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 ZNF211Q13398 564 aaPredicted RBP6.79□□□□□ -1.32
UPF2-201ENST00000356352 XRRA1Q6P2D8 792 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 TRAPPC11Q7Z392 1133 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 SGMS1Q86VZ5 419 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 AGGF1Q8N302 714 aaeCLIP6.79□□□□□ -1.326e-9■■■■□ 24.9
UPF2-201ENST00000356352 SNX31Q8N9S9 440 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 RNF149Q8NC42 400 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 SGSM3Q96HU1 749 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 RNPC3Q96LT9 517 aaKnown RBP6.79□□□□□ -1.32
UPF2-201ENST00000356352 CCDC134Q9H6E4 229 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 TMEM260Q9NX78 707 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 HSPBP1Q9NZL4 362 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 RNF181Q9P0P0 153 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 APEX2Q9UBZ4 518 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 AURKCQ9UQB9 309 aa6.79□□□□□ -1.32
UPF2-201ENST00000356352 P4HA2O15460 535 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 CCDC159P0C7I6 412 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 GNL1P36915 607 aaPredicted RBP6.78□□□□□ -1.32
UPF2-201ENST00000356352 PNPLA4P41247 253 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 RAD23BP54727 409 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 DEFA1P59665 94 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 DEFA3P59666 94 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 CCDC85BQ15834 202 aaPredicted RBP6.78□□□□□ -1.32
UPF2-201ENST00000356352 SPDYAQ5MJ70 313 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 LDHDQ86WU2 507 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 SLC7A14Q8TBB6 771 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 DTX3LQ8TDB6 740 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 CLMNQ96JQ2 1002 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 LBHD1Q9BQE6 289 aaPredicted RBP6.78□□□□□ -1.32
UPF2-201ENST00000356352 FRMD8P1Q9BZ68 369 aaPredicted RBP6.78□□□□□ -1.32
UPF2-201ENST00000356352 DDX47Q9H0S4 455 aaKnown RBP6.78□□□□□ -1.32
UPF2-201ENST00000356352 MUC3BQ9H195 1237 aa6.78□□□□□ -1.32
UPF2-201ENST00000356352 CYP4F11Q9HBI6 524 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms