RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 FAM83CQ9BQN1 747 aa2.58□□□□□ -2
VPS54-202ENST00000354504 TARS2Q9BW92 718 aaKnown RBP2.58□□□□□ -2
VPS54-202ENST00000354504 TMEM39BQ9GZU3 492 aa2.58□□□□□ -2
VPS54-202ENST00000354504 KLHL25Q9H0H3 589 aa2.58□□□□□ -2
VPS54-202ENST00000354504 EPN3Q9H201 632 aa2.58□□□□□ -2
VPS54-202ENST00000354504 BLZF1Q9H2G9 400 aa2.58□□□□□ -2
VPS54-202ENST00000354504 TDRD3Q9H7E2 651 aaKnown RBP2.58□□□□□ -2
VPS54-202ENST00000354504 MKNK2Q9HBH9 465 aa2.58□□□□□ -2
VPS54-202ENST00000354504 GPRC5CQ9NQ84 441 aa2.58□□□□□ -2
VPS54-202ENST00000354504 C1GALT1Q9NS00 363 aa2.58□□□□□ -2
VPS54-202ENST00000354504 PRDM4Q9UKN5 801 aa2.58□□□□□ -2
VPS54-202ENST00000354504 TFR2Q9UP52 801 aa2.58□□□□□ -2
VPS54-202ENST00000354504 RIPK3Q9Y572 518 aa2.58□□□□□ -2
VPS54-202ENST00000354504 PCDHA3Q9Y5H8 950 aa2.58□□□□□ -2
VPS54-202ENST00000354504 FHOD1Q9Y613 1164 aa2.58□□□□□ -2
VPS54-202ENST00000354504 ADGRA3Q8IWK6 1321 aa2.58□□□□□ -2
VPS54-202ENST00000354504 NPHP3-ACAD11A0A0J9YXS1 232 aa2.58□□□□□ -2
VPS54-202ENST00000354504 A0A1W2PQJ5 194 aa2.58□□□□□ -2
VPS54-202ENST00000354504 SLC26A4O43511 780 aa2.58□□□□□ -2
VPS54-202ENST00000354504 EFEMP2O95967 443 aa2.58□□□□□ -2
VPS54-202ENST00000354504 EDNRBP24530 442 aa2.58□□□□□ -2
VPS54-202ENST00000354504 NOS3P29474 1203 aa2.58□□□□□ -2
VPS54-202ENST00000354504 SLC16A2P36021 539 aa2.58□□□□□ -2
VPS54-202ENST00000354504 ME1P48163 572 aa2.58□□□□□ -2
VPS54-202ENST00000354504 TGFB2P61812 414 aa2.58□□□□□ -2
VPS54-202ENST00000354504 GSTO1P78417 241 aa2.58□□□□□ -2
VPS54-202ENST00000354504 POU5F1Q01860 360 aaKnown RBP2.58□□□□□ -2
VPS54-202ENST00000354504 MYL5Q02045 173 aa2.58□□□□□ -2
VPS54-202ENST00000354504 ID3Q02535 119 aa2.58□□□□□ -2
VPS54-202ENST00000354504 CHAF1AQ13111 956 aaPredicted RBP2.58□□□□□ -2
VPS54-202ENST00000354504 FXNQ16595 210 aa2.58□□□□□ -2
VPS54-202ENST00000354504 UGCGQ16739 394 aa2.58□□□□□ -2
VPS54-202ENST00000354504 MUM1L1Q5H9M0 696 aa2.58□□□□□ -2
VPS54-202ENST00000354504 SEZ6L2Q6UXD5 910 aa2.58□□□□□ -2
VPS54-202ENST00000354504 C22orf34Q6ZV56 151 aa2.58□□□□□ -2
VPS54-202ENST00000354504 ARMCX6Q7L4S7 300 aa2.58□□□□□ -2
VPS54-202ENST00000354504 HDXQ7Z353 690 aa2.58□□□□□ -2
VPS54-202ENST00000354504 IRF2BP2Q7Z5L9 587 aa2.58□□□□□ -2
VPS54-202ENST00000354504 RALYLQ86SE5 291 aaKnown RBP2.58□□□□□ -2
VPS54-202ENST00000354504 ZNF227Q86WZ6 799 aa2.58□□□□□ -2
VPS54-202ENST00000354504 ZDHHC14Q8IZN3 488 aa2.58□□□□□ -2
VPS54-202ENST00000354504 LINC01465Q8N7H1 131 aa2.58□□□□□ -2
VPS54-202ENST00000354504 C12orf50Q8NA57 414 aaPredicted RBP2.58□□□□□ -2
VPS54-202ENST00000354504 AGBL3Q8NEM8 1001 aa2.58□□□□□ -2
VPS54-202ENST00000354504 MORC4Q8TE76 937 aa2.58□□□□□ -2
VPS54-202ENST00000354504 STAMQ92783 540 aa2.58□□□□□ -2
VPS54-202ENST00000354504 PCYT2Q99447 389 aa2.58□□□□□ -2
VPS54-202ENST00000354504 CHP1Q99653 195 aa2.58□□□□□ -2
VPS54-202ENST00000354504 LZTS2Q9BRK4 669 aa2.58□□□□□ -2
VPS54-202ENST00000354504 NACAP1Q9BZK3 213 aa2.58□□□□□ -2
VPS54-202ENST00000354504 LRRC4CQ9HCJ2 640 aa2.58□□□□□ -2
VPS54-202ENST00000354504 VTA1Q9NP79 307 aa2.58□□□□□ -2
VPS54-202ENST00000354504 ABHD10Q9NUJ1 306 aa2.58□□□□□ -2
VPS54-202ENST00000354504 AGPAT5Q9NUQ2 364 aa2.58□□□□□ -2
VPS54-202ENST00000354504 USP40Q9NVE5 1235 aa2.58□□□□□ -2
VPS54-202ENST00000354504 GNL3LQ9NVN8 582 aaKnown RBP2.58□□□□□ -2
VPS54-202ENST00000354504 ARHGAP20Q9P2F6 1191 aa2.58□□□□□ -2
VPS54-202ENST00000354504 STXBP5LQ9Y2K9 1186 aa2.58□□□□□ -2
VPS54-202ENST00000354504 UBIAD1Q9Y5Z9 338 aa2.58□□□□□ -2
VPS54-202ENST00000354504 MRFAP1Q9Y605 127 aa2.58□□□□□ -2
VPS54-202ENST00000354504 DENND4AQ7Z401 1863 aa2.58□□□□□ -2
VPS54-202ENST00000354504 MICAL3Q7RTP6 2002 aa2.58□□□□□ -2
VPS54-202ENST00000354504 NOTCH4Q99466 2003 aa2.58□□□□□ -2
VPS54-202ENST00000354504 COL4A2P08572 1712 aa2.58□□□□□ -2
VPS54-202ENST00000354504 A0A1W2PQC6 194 aa2.57□□□□□ -2
VPS54-202ENST00000354504 LCHNA4D1U4 455 aa2.57□□□□□ -2
VPS54-202ENST00000354504 F5H6K3 240 aa2.57□□□□□ -2
VPS54-202ENST00000354504 BIN1O00499 593 aa2.57□□□□□ -2
VPS54-202ENST00000354504 PJA2O43164 708 aa2.57□□□□□ -2
VPS54-202ENST00000354504 TADA3O75528 432 aa2.57□□□□□ -2
VPS54-202ENST00000354504 RASGRP1O95267 797 aa2.57□□□□□ -2
VPS54-202ENST00000354504 CCNE2O96020 404 aa2.57□□□□□ -2
VPS54-202ENST00000354504 MYL1P05976 194 aa2.57□□□□□ -2
VPS54-202ENST00000354504 SLC3A2P08195 630 aaKnown RBP2.57□□□□□ -2
VPS54-202ENST00000354504 PLEKP08567 350 aaPredicted RBP2.57□□□□□ -2
VPS54-202ENST00000354504 ARL4DP49703 201 aa2.57□□□□□ -2
VPS54-202ENST00000354504 SNAP25P60880 206 aa2.57□□□□□ -2
VPS54-202ENST00000354504 SOX4Q06945 474 aaPredicted RBP2.57□□□□□ -2
VPS54-202ENST00000354504 KLRC3Q07444 240 aa2.57□□□□□ -2
VPS54-202ENST00000354504 ISM2Q6H9L7 571 aa2.57□□□□□ -2
VPS54-202ENST00000354504 USP17L6PQ6QN14 398 aa2.57□□□□□ -2
VPS54-202ENST00000354504 LBX2Q6XYB7 198 aa2.57□□□□□ -2
VPS54-202ENST00000354504 C15orf39Q6ZRI6 1047 aa2.57□□□□□ -2
VPS54-202ENST00000354504 CATIPQ7Z7H3 387 aa2.57□□□□□ -2
VPS54-202ENST00000354504 TEX2Q8IWB9 1127 aa2.57□□□□□ -2
VPS54-202ENST00000354504 TRIM59Q8IWR1 403 aa2.57□□□□□ -2
VPS54-202ENST00000354504 MRPL41Q8IXM3 137 aaKnown RBP2.57□□□□□ -2
VPS54-202ENST00000354504 SYNPOQ8N3V7 929 aa2.57□□□□□ -2
VPS54-202ENST00000354504 MLKLQ8NB16 471 aa2.57□□□□□ -2
VPS54-202ENST00000354504 RPGRQ92834 1020 aaKnown RBP2.57□□□□□ -2
VPS54-202ENST00000354504 AK8Q96MA6 479 aa2.57□□□□□ -2
VPS54-202ENST00000354504 SENP7Q9BQF6 1050 aa2.57□□□□□ -2
VPS54-202ENST00000354504 MS4A5Q9H3V2 200 aa2.57□□□□□ -2
VPS54-202ENST00000354504 SLC38A10Q9HBR0 1119 aa2.57□□□□□ -2
VPS54-202ENST00000354504 ANO10Q9NW15 660 aa2.57□□□□□ -2
VPS54-202ENST00000354504 FBLN5Q9UBX5 448 aa2.57□□□□□ -2
VPS54-202ENST00000354504 CLIP2Q9UDT6 1046 aa2.57□□□□□ -2
VPS54-202ENST00000354504 ZBTB21Q9ULJ3 1066 aa2.57□□□□□ -2
VPS54-202ENST00000354504 CAPN11Q9UMQ6 739 aa2.57□□□□□ -2
VPS54-202ENST00000354504 FZD1Q9UP38 647 aa2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms