RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 CEP89Q96ST8 783 aa23.63■■□□□ 1.37
UPF3A-201ENST00000351487 FZD1Q9UP38 647 aa23.63■■□□□ 1.37
UPF3A-201ENST00000351487 PTPN22Q9Y2R2 807 aa23.63■■□□□ 1.37
UPF3A-201ENST00000351487 SORBS3O60504 671 aa23.62■■□□□ 1.37
UPF3A-201ENST00000351487 LDHAP00338 332 aaKnown RBP23.62■■□□□ 1.37
UPF3A-201ENST00000351487 ACOT2P49753 483 aa23.62■■□□□ 1.37
UPF3A-201ENST00000351487 ADCY2Q08462 1091 aa23.62■■□□□ 1.37
UPF3A-201ENST00000351487 NOL9Q5SY16 702 aaKnown RBP23.62■■□□□ 1.37
UPF3A-201ENST00000351487 ANGEL2Q5VTE6 544 aaKnown RBP23.62■■□□□ 1.37
UPF3A-201ENST00000351487 CPA5Q8WXQ8 436 aa23.62■■□□□ 1.37
UPF3A-201ENST00000351487 CENPTQ96BT3 561 aa23.62■■□□□ 1.37
UPF3A-201ENST00000351487 NIFKQ9BYG3 293 aaKnown RBP23.62■■□□□ 1.37
UPF3A-201ENST00000351487 TRIM7Q9C029 511 aa23.62■■□□□ 1.37
UPF3A-201ENST00000351487 WHRNQ9P202 907 aa23.62■■□□□ 1.37
UPF3A-201ENST00000351487 IGKV6D-21A0A0A0MT36 114 aa23.61■■□□□ 1.37
UPF3A-201ENST00000351487 RIPK2O43353 540 aa23.61■■□□□ 1.37
UPF3A-201ENST00000351487 MAN1A1P33908 653 aa23.61■■□□□ 1.37
UPF3A-201ENST00000351487 CUL2Q13617 745 aa23.61■■□□□ 1.37
UPF3A-201ENST00000351487 PRAMEF18Q5VWM3 479 aa23.61■■□□□ 1.37
UPF3A-201ENST00000351487 DEPTORQ8TB45 409 aa23.61■■□□□ 1.37
UPF3A-201ENST00000351487 RBAKQ9NYW8 714 aaPredicted RBP23.61■■□□□ 1.37
UPF3A-201ENST00000351487 CNTN6Q9UQ52 1028 aa23.61■■□□□ 1.37
UPF3A-201ENST00000351487 SBDSQ9Y3A5 250 aaKnown RBP eCLIP23.61■■□□□ 1.37
UPF3A-201ENST00000351487 SSC5DA1L4H1 1573 aa23.61■■□□□ 1.37
UPF3A-201ENST00000351487 C5orf60A6NFR6 353 aa23.61■■□□□ 1.37
UPF3A-201ENST00000351487 KIAA0754O94854 1291 aa23.61■■□□□ 1.37
UPF3A-201ENST00000351487 PPP1R7Q15435 360 aa23.61■■□□□ 1.37
UPF3A-201ENST00000351487 ZNF568Q3ZCX4 644 aa23.61■■□□□ 1.37
UPF3A-201ENST00000351487 SYDE1Q6ZW31 735 aaPredicted RBP23.61■■□□□ 1.37
UPF3A-201ENST00000351487 ARMC9Q7Z3E5 817 aa23.61■■□□□ 1.37
UPF3A-201ENST00000351487 CHST13Q8NET6 341 aa23.61■■□□□ 1.37
UPF3A-201ENST00000351487 RAPGEF5Q92565 580 aa23.61■■□□□ 1.37
UPF3A-201ENST00000351487 DDX27Q96GQ7 796 aaKnown RBP23.61■■□□□ 1.37
UPF3A-201ENST00000351487 A0A0G2JMZ2 1700 aa23.61■■□□□ 1.37
UPF3A-201ENST00000351487 UMODL1Q5DID0 1318 aa23.61■■□□□ 1.37
UPF3A-201ENST00000351487 PTPRFP10586 1907 aa23.6■■□□□ 1.37
UPF3A-201ENST00000351487 A0A0B4J269 797 aa23.6■■□□□ 1.37
UPF3A-201ENST00000351487 K7ERI5 159 aa23.6■■□□□ 1.37
UPF3A-201ENST00000351487 CALCOCO2Q13137 446 aa23.6■■□□□ 1.37
UPF3A-201ENST00000351487 SPOPLQ6IQ16 392 aa23.6■■□□□ 1.37
UPF3A-201ENST00000351487 SLC7A3Q8WY07 619 aa23.6■■□□□ 1.37
UPF3A-201ENST00000351487 VCPIP1Q96JH7 1222 aa23.6■■□□□ 1.37
UPF3A-201ENST00000351487 CGRRF1Q99675 332 aa23.6■■□□□ 1.37
UPF3A-201ENST00000351487 APOBEC3GQ9HC16 384 aaKnown RBP23.6■■□□□ 1.37
UPF3A-201ENST00000351487 TMEM51Q9NW97 253 aa23.6■■□□□ 1.37
UPF3A-201ENST00000351487 AFG3L2Q9Y4W6 797 aa23.6■■□□□ 1.37
UPF3A-201ENST00000351487 ADGRA2Q96PE1 1338 aa23.6■■□□□ 1.37
UPF3A-201ENST00000351487 LRRIQ4A6NIV6 560 aa23.6■■□□□ 1.37
UPF3A-201ENST00000351487 TP73O15350 636 aa23.6■■□□□ 1.37
UPF3A-201ENST00000351487 PROSCO94903 275 aa23.6■■□□□ 1.37
UPF3A-201ENST00000351487 MMP13P45452 471 aa23.6■■□□□ 1.37
UPF3A-201ENST00000351487 NOMO3P69849 1222 aa23.6■■□□□ 1.37
UPF3A-201ENST00000351487 KRT17Q04695 432 aa23.6■■□□□ 1.37
UPF3A-201ENST00000351487 TTC31Q49AM3 519 aaPredicted RBP23.6■■□□□ 1.37
UPF3A-201ENST00000351487 C6orf118Q5T5N4 469 aa23.6■■□□□ 1.37
UPF3A-201ENST00000351487 C6orf89Q6UWU4 347 aa23.6■■□□□ 1.37
UPF3A-201ENST00000351487 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.6■■□□□ 1.37
UPF3A-201ENST00000351487 TMEM134Q9H6X4 195 aa23.6■■□□□ 1.37
UPF3A-201ENST00000351487 ZNF541Q9H0D2 1346 aa23.59■■□□□ 1.37
UPF3A-201ENST00000351487 AGTP01019 485 aa23.59■■□□□ 1.37
UPF3A-201ENST00000351487 FGFR4P22455 802 aa23.59■■□□□ 1.37
UPF3A-201ENST00000351487 TBXAS1P24557 533 aaPredicted RBP23.59■■□□□ 1.37
UPF3A-201ENST00000351487 TNFAIP8L3Q5GJ75 292 aa23.59■■□□□ 1.37
UPF3A-201ENST00000351487 PPP1R2P3Q6NXS1 205 aa23.59■■□□□ 1.37
UPF3A-201ENST00000351487 ABRAQ8N0Z2 381 aa23.59■■□□□ 1.37
UPF3A-201ENST00000351487 C1orf54Q8WWF1 131 aa23.59■■□□□ 1.37
UPF3A-201ENST00000351487 ZBTB45Q96K62 511 aaPredicted RBP23.59■■□□□ 1.37
UPF3A-201ENST00000351487 CNTNAP2Q9UHC6 1331 aa23.59■■□□□ 1.37
UPF3A-201ENST00000351487 PSTPIP1O43586 416 aa23.59■■□□□ 1.37
UPF3A-201ENST00000351487 CLTAP09496 248 aa23.59■■□□□ 1.37
UPF3A-201ENST00000351487 RFC5P40937 340 aa23.59■■□□□ 1.37
UPF3A-201ENST00000351487 LIG3P49916 1009 aa23.59■■□□□ 1.37
UPF3A-201ENST00000351487 PTK6Q13882 451 aa23.59■■□□□ 1.37
UPF3A-201ENST00000351487 SH3D19Q5HYK7 790 aa23.59■■□□□ 1.37
UPF3A-201ENST00000351487 UBAP2Q5T6F2 1119 aaKnown RBP23.59■■□□□ 1.37
UPF3A-201ENST00000351487 ERMARDQ5T6L9 678 aa23.59■■□□□ 1.37
UPF3A-201ENST00000351487 LIN9Q5TKA1 542 aa23.59■■□□□ 1.37
UPF3A-201ENST00000351487 RHBDF2Q6PJF5 856 aa23.59■■□□□ 1.37
UPF3A-201ENST00000351487 TRMT10CQ7L0Y3 403 aaKnown RBP23.59■■□□□ 1.37
UPF3A-201ENST00000351487 PACS2Q86VP3 889 aa23.59■■□□□ 1.37
UPF3A-201ENST00000351487 MSTO1Q9BUK6 570 aa23.59■■□□□ 1.37
UPF3A-201ENST00000351487 TARS2Q9BW92 718 aaKnown RBP23.59■■□□□ 1.37
UPF3A-201ENST00000351487 RGS16O15492 202 aaPredicted RBP23.58■■□□□ 1.37
UPF3A-201ENST00000351487 PHF13Q86YI8 300 aaPredicted RBP23.58■■□□□ 1.37
UPF3A-201ENST00000351487 OTUD6BQ8N6M0 293 aa23.58■■□□□ 1.37
UPF3A-201ENST00000351487 GRK7Q8WTQ7 553 aa23.58■■□□□ 1.37
UPF3A-201ENST00000351487 CHST7Q9NS84 486 aa23.58■■□□□ 1.37
UPF3A-201ENST00000351487 GNA15P30679 374 aa23.57■■□□□ 1.36
UPF3A-201ENST00000351487 TARBP2Q15633 366 aaKnown RBP23.57■■□□□ 1.36
UPF3A-201ENST00000351487 ZBTB41Q5SVQ8 909 aa23.57■■□□□ 1.36
UPF3A-201ENST00000351487 MICALL1Q8N3F8 863 aa23.57■■□□□ 1.36
UPF3A-201ENST00000351487 XPO6Q96QU8 1125 aaKnown RBP23.57■■□□□ 1.36
UPF3A-201ENST00000351487 HERPUD2Q9BSE4 406 aa23.57■■□□□ 1.36
UPF3A-201ENST00000351487 DCLK3Q9C098 648 aa23.57■■□□□ 1.36
UPF3A-201ENST00000351487 ADAM7Q9H2U9 754 aa23.57■■□□□ 1.36
UPF3A-201ENST00000351487 AZI2Q9H6S1 392 aa23.57■■□□□ 1.36
UPF3A-201ENST00000351487 MRPL47Q9HD33 250 aaKnown RBP23.57■■□□□ 1.36
UPF3A-201ENST00000351487 FBXO40Q9UH90 709 aa23.57■■□□□ 1.36
UPF3A-201ENST00000351487 PCDHB4Q9Y5E5 795 aa23.57■■□□□ 1.36
UPF3A-201ENST00000351487 PPP2R3BQ9Y5P8 575 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms