RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 FOXP3Q9BZS1 431 aa16.91■□□□□ 0.3
HMGA1-202ENST00000347617 VCXQ9H320 206 aa16.91■□□□□ 0.3
HMGA1-202ENST00000347617 ETNK1Q9HBU6 452 aa16.91■□□□□ 0.3
HMGA1-202ENST00000347617 APEX2Q9UBZ4 518 aa16.91■□□□□ 0.3
HMGA1-202ENST00000347617 PARP14Q460N5 1801 aa16.91■□□□□ 0.3
HMGA1-202ENST00000347617 LOXHD1Q8IVV2 1947 aa16.9■□□□□ 0.3
HMGA1-202ENST00000347617 PSMD10O75832 226 aa16.9■□□□□ 0.3
HMGA1-202ENST00000347617 TTC4O95801 387 aa16.9■□□□□ 0.3
HMGA1-202ENST00000347617 BRAFP15056 766 aa16.9■□□□□ 0.3
HMGA1-202ENST00000347617 ABCB4P21439 1286 aa16.9■□□□□ 0.3
HMGA1-202ENST00000347617 IREB2P48200 963 aaKnown RBP16.9■□□□□ 0.3
HMGA1-202ENST00000347617 PEX5P50542 639 aa16.9■□□□□ 0.3
HMGA1-202ENST00000347617 CASP5P51878 434 aa16.9■□□□□ 0.3
HMGA1-202ENST00000347617 PCNX4Q63HM2 1172 aa16.9■□□□□ 0.3
HMGA1-202ENST00000347617 TTC27Q6P3X3 843 aa16.9■□□□□ 0.3
HMGA1-202ENST00000347617 OTOP1Q7RTM1 612 aa16.9■□□□□ 0.3
HMGA1-202ENST00000347617 KIF2BQ8N4N8 673 aa16.9■□□□□ 0.3
HMGA1-202ENST00000347617 REEP2Q9BRK0 252 aa16.9■□□□□ 0.3
HMGA1-202ENST00000347617 MXRA8Q9BRK3 442 aa16.9■□□□□ 0.3
HMGA1-202ENST00000347617 THAP2Q9H0W7 228 aa16.9■□□□□ 0.3
HMGA1-202ENST00000347617 RAVER2Q9HCJ3 691 aaKnown RBP16.9■□□□□ 0.3
HMGA1-202ENST00000347617 TUFT1Q9NNX1 390 aa16.9■□□□□ 0.3
HMGA1-202ENST00000347617 KCNK9Q9NPC2 374 aa16.9■□□□□ 0.3
HMGA1-202ENST00000347617 CTTNBP2NLQ9P2B4 639 aa16.9■□□□□ 0.3
HMGA1-202ENST00000347617 TRAFD1O14545 582 aaPredicted RBP16.89■□□□□ 0.3
HMGA1-202ENST00000347617 GRIN3BO60391 1043 aa16.89■□□□□ 0.3
HMGA1-202ENST00000347617 CDH16O75309 829 aa16.89■□□□□ 0.3
HMGA1-202ENST00000347617 MED24O75448 989 aa16.89■□□□□ 0.3
HMGA1-202ENST00000347617 TAL1P17542 331 aaPredicted RBP16.89■□□□□ 0.3
HMGA1-202ENST00000347617 ABL2P42684 1182 aa16.89■□□□□ 0.3
HMGA1-202ENST00000347617 HMGCS2P54868 508 aa16.89■□□□□ 0.3
HMGA1-202ENST00000347617 ROR2Q01974 943 aaKnown RBP16.89■□□□□ 0.3
HMGA1-202ENST00000347617 STAT4Q14765 748 aa16.89■□□□□ 0.3
HMGA1-202ENST00000347617 PDCD2Q16342 344 aaPredicted RBP16.89■□□□□ 0.3
HMGA1-202ENST00000347617 RHBDF2Q6PJF5 856 aa16.89■□□□□ 0.3
HMGA1-202ENST00000347617 ADAT2Q7Z6V5 191 aaKnown RBP16.89■□□□□ 0.3
HMGA1-202ENST00000347617 SPDYE1Q8NFV5 336 aaPredicted RBP16.89■□□□□ 0.3
HMGA1-202ENST00000347617 SYTL5Q8TDW5 730 aaPredicted RBP16.89■□□□□ 0.3
HMGA1-202ENST00000347617 INTS2Q9H0H0 1204 aaKnown RBP16.89■□□□□ 0.3
HMGA1-202ENST00000347617 SEL1LQ9UBV2 794 aa16.89■□□□□ 0.3
HMGA1-202ENST00000347617 PNMA3Q9UL41 463 aa16.89■□□□□ 0.3
HMGA1-202ENST00000347617 CSADQ9Y600 493 aa16.89■□□□□ 0.3
HMGA1-202ENST00000347617 SNCAIPQ9Y6H5 919 aa16.89■□□□□ 0.3
HMGA1-202ENST00000347617 RLFQ13129 1914 aa16.89■□□□□ 0.3
HMGA1-202ENST00000347617 NFIBO00712 420 aa16.89■□□□□ 0.29
HMGA1-202ENST00000347617 COPB2P35606 906 aa16.89■□□□□ 0.29
HMGA1-202ENST00000347617 PEX19P40855 299 aa16.89■□□□□ 0.29
HMGA1-202ENST00000347617 GCLCP48506 637 aaPredicted RBP16.89■□□□□ 0.29
HMGA1-202ENST00000347617 CTCFP49711 727 aaPredicted RBP16.89■□□□□ 0.29
HMGA1-202ENST00000347617 CACNB1Q02641 598 aaPredicted RBP16.89■□□□□ 0.29
HMGA1-202ENST00000347617 MYBPC2Q14324 1141 aa16.89■□□□□ 0.29
HMGA1-202ENST00000347617 CWF19L1Q69YN2 538 aaKnown RBP16.89■□□□□ 0.29
HMGA1-202ENST00000347617 GJB7Q6PEY0 223 aa16.89■□□□□ 0.29
HMGA1-202ENST00000347617 VSIG1Q86XK7 387 aa16.89■□□□□ 0.29
HMGA1-202ENST00000347617 CATSPER3Q86XQ3 398 aa16.89■□□□□ 0.29
HMGA1-202ENST00000347617 DNAAF5Q86Y56 855 aa16.89■□□□□ 0.29
HMGA1-202ENST00000347617 RELL1Q8IUW5 271 aa16.89■□□□□ 0.29
HMGA1-202ENST00000347617 CPXCR1Q8N123 301 aa16.89■□□□□ 0.29
HMGA1-202ENST00000347617 CYP2W1Q8TAV3 490 aa16.89■□□□□ 0.29
HMGA1-202ENST00000347617 MGARPQ8TDB4 240 aa16.89■□□□□ 0.29
HMGA1-202ENST00000347617 SNF8Q96H20 258 aa16.89■□□□□ 0.29
HMGA1-202ENST00000347617 YIPF3Q9GZM5 350 aa16.89■□□□□ 0.29
HMGA1-202ENST00000347617 COG5Q9UP83 839 aa16.89■□□□□ 0.29
HMGA1-202ENST00000347617 MROH7Q68CQ1 1323 aa16.89■□□□□ 0.29
HMGA1-202ENST00000347617 GLTPD2A6NH11 291 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 UNCXA6NJT0 531 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 A8MUI8 341 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 PEX11AO75192 247 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 SPATA31C1P0DKV0 1188 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 GZMAP12544 262 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 PCK1P35558 622 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 PAPOLAP51003 745 aaKnown RBP16.88■□□□□ 0.29
HMGA1-202ENST00000347617 KLC1Q07866 573 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 PTK6Q13882 451 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 VGLL4Q14135 290 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 CTTNQ14247 550 aaKnown RBP16.88■□□□□ 0.29
HMGA1-202ENST00000347617 LRRC14Q15048 493 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 LONRF1Q17RB8 773 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 B3GNT9Q6UX72 402 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 ECHDC2Q86YB7 292 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 ASAP3Q8TDY4 903 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 CD101Q93033 1021 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 ATG4CQ96DT6 458 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 RMDN2Q96LZ7 410 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 HSD17B14Q9BPX1 270 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 TUBB6Q9BUF5 446 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 PITPNM3Q9BZ71 974 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 GPR88Q9GZN0 384 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 UBIAD1Q9Y5Z9 338 aa16.88■□□□□ 0.29
HMGA1-202ENST00000347617 CXCL11O14625 94 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 P4HA2O15460 535 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 SORBS3O60504 671 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 GCNT3O95395 438 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 ABHD2P08910 425 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 GSTA2P09210 222 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 TPBGLP0DKB5 382 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 EPHX2P34913 555 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 CASP4P49662 377 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 MXRA7P84157 204 aa16.87■□□□□ 0.29
HMGA1-202ENST00000347617 RNASELQ05823 741 aaKnown RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms