RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 TNNC2P02585 160 aa20.52■□□□□ 0.88
CHMP4A-201ENST00000347519 PON1P27169 355 aa20.52■□□□□ 0.88
CHMP4A-201ENST00000347519 BIRC3Q13489 604 aa20.52■□□□□ 0.88
CHMP4A-201ENST00000347519 GBP6Q6ZN66 633 aa20.52■□□□□ 0.88
CHMP4A-201ENST00000347519 NPAS4Q8IUM7 802 aa20.52■□□□□ 0.88
CHMP4A-201ENST00000347519 VSTM4Q8IW00 320 aa20.52■□□□□ 0.88
CHMP4A-201ENST00000347519 EHBP1Q8NDI1 1231 aa20.52■□□□□ 0.88
CHMP4A-201ENST00000347519 ANKRD36BP1Q96IX9 119 aa20.52■□□□□ 0.88
CHMP4A-201ENST00000347519 LSM14BQ9BX40 385 aaKnown RBP20.52■□□□□ 0.88
CHMP4A-201ENST00000347519 INTS2Q9H0H0 1204 aaKnown RBP20.52■□□□□ 0.88
CHMP4A-201ENST00000347519 GOLGA2P5Q9HBQ8 144 aa20.52■□□□□ 0.88
CHMP4A-201ENST00000347519 SIX2Q9NPC8 291 aa20.52■□□□□ 0.88
CHMP4A-201ENST00000347519 UBN1Q9NPG3 1134 aa20.52■□□□□ 0.88
CHMP4A-201ENST00000347519 DPP3Q9NY33 737 aa20.52■□□□□ 0.88
CHMP4A-201ENST00000347519 GCNT4Q9P109 453 aa20.52■□□□□ 0.88
CHMP4A-201ENST00000347519 SCN1AP35498 2009 aa20.52■□□□□ 0.87
CHMP4A-201ENST00000347519 A0A1W2PQC6 194 aa20.51■□□□□ 0.87
CHMP4A-201ENST00000347519 GTPBP10A4D1E9 387 aaKnown RBP20.51■□□□□ 0.87
CHMP4A-201ENST00000347519 PPEF2O14830 753 aa20.51■□□□□ 0.87
CHMP4A-201ENST00000347519 EPHB6O15197 1021 aa20.51■□□□□ 0.87
CHMP4A-201ENST00000347519 P4HA2O15460 535 aa20.51■□□□□ 0.87
CHMP4A-201ENST00000347519 B4GALT3O60512 393 aa20.51■□□□□ 0.87
CHMP4A-201ENST00000347519 N4BP1O75113 896 aaKnown RBP20.51■□□□□ 0.87
CHMP4A-201ENST00000347519 UPP2O95045 317 aa20.51■□□□□ 0.87
CHMP4A-201ENST00000347519 FGBP02675 491 aa20.51■□□□□ 0.87
CHMP4A-201ENST00000347519 AP3M2P53677 418 aa20.51■□□□□ 0.87
CHMP4A-201ENST00000347519 EXOC3L4Q17RC7 722 aa20.51■□□□□ 0.87
CHMP4A-201ENST00000347519 NT5DC4Q86YG4 428 aa20.51■□□□□ 0.87
CHMP4A-201ENST00000347519 CASD1Q96PB1 797 aa20.51■□□□□ 0.87
CHMP4A-201ENST00000347519 RPS6KC1Q96S38 1066 aa20.51■□□□□ 0.87
CHMP4A-201ENST00000347519 PI4K2AQ9BTU6 479 aa20.51■□□□□ 0.87
CHMP4A-201ENST00000347519 CXXC1Q9P0U4 656 aaPredicted RBP20.51■□□□□ 0.87
CHMP4A-201ENST00000347519 LRFN2Q9ULH4 789 aa20.51■□□□□ 0.87
CHMP4A-201ENST00000347519 UBQLN1Q9UMX0 589 aaKnown RBP20.51■□□□□ 0.87
CHMP4A-201ENST00000347519 ITGB3P05106 788 aa20.5■□□□□ 0.87
CHMP4A-201ENST00000347519 IGFBP6P24592 240 aaPredicted RBP20.5■□□□□ 0.87
CHMP4A-201ENST00000347519 GLB1LQ6UWU2 654 aa20.5■□□□□ 0.87
CHMP4A-201ENST00000347519 TMC6Q7Z403 805 aa20.5■□□□□ 0.87
CHMP4A-201ENST00000347519 FBXL13Q8NEE6 735 aa20.5■□□□□ 0.87
CHMP4A-201ENST00000347519 CACTINQ8WUQ7 758 aaKnown RBP20.5■□□□□ 0.87
CHMP4A-201ENST00000347519 RAB20Q9NX57 234 aa20.5■□□□□ 0.87
CHMP4A-201ENST00000347519 AJAP1Q9UKB5 411 aaPredicted RBP20.5■□□□□ 0.87
CHMP4A-201ENST00000347519 PHACTR2O75167 634 aa20.49■□□□□ 0.87
CHMP4A-201ENST00000347519 BAIAP3O94812 1187 aa20.49■□□□□ 0.87
CHMP4A-201ENST00000347519 NOL4O94818 638 aa20.49■□□□□ 0.87
CHMP4A-201ENST00000347519 TPM3P06753 285 aa20.49■□□□□ 0.87
CHMP4A-201ENST00000347519 THP07101 528 aa20.49■□□□□ 0.87
CHMP4A-201ENST00000347519 CDC25BP30305 580 aa20.49■□□□□ 0.87
CHMP4A-201ENST00000347519 POLR2BP30876 1174 aaKnown RBP20.49■□□□□ 0.87
CHMP4A-201ENST00000347519 PIK3CAP42336 1068 aa20.49■□□□□ 0.87
CHMP4A-201ENST00000347519 MYL6P60660 151 aa20.49■□□□□ 0.87
CHMP4A-201ENST00000347519 LRMPQ12912 555 aa20.49■□□□□ 0.87
CHMP4A-201ENST00000347519 NCOA4Q13772 614 aa20.49■□□□□ 0.87
CHMP4A-201ENST00000347519 NOMO2Q5JPE7 1267 aa20.49■□□□□ 0.87
CHMP4A-201ENST00000347519 SPOPLQ6IQ16 392 aa20.49■□□□□ 0.87
CHMP4A-201ENST00000347519 GJB7Q6PEY0 223 aa20.49■□□□□ 0.87
CHMP4A-201ENST00000347519 BEST2Q8NFU1 509 aa20.49■□□□□ 0.87
CHMP4A-201ENST00000347519 TOP1MTQ969P6 601 aa20.49■□□□□ 0.87
CHMP4A-201ENST00000347519 PCMTD1Q96MG8 357 aaPredicted RBP20.49■□□□□ 0.87
CHMP4A-201ENST00000347519 LBHD1Q9BQE6 289 aaPredicted RBP20.49■□□□□ 0.87
CHMP4A-201ENST00000347519 GANQ9H2C0 597 aa20.49■□□□□ 0.87
CHMP4A-201ENST00000347519 HCSTQ9UBK5 93 aa20.49■□□□□ 0.87
CHMP4A-201ENST00000347519 RNF225M0QZC1 329 aaPredicted RBP20.48■□□□□ 0.87
CHMP4A-201ENST00000347519 DDHD2O94830 711 aa20.48■□□□□ 0.87
CHMP4A-201ENST00000347519 AMHP03971 560 aa20.48■□□□□ 0.87
CHMP4A-201ENST00000347519 FAM117BQ6P1L5 589 aa20.48■□□□□ 0.87
CHMP4A-201ENST00000347519 TRIM65Q6PJ69 517 aa20.48■□□□□ 0.87
CHMP4A-201ENST00000347519 ZNF280BQ86YH2 543 aa20.48■□□□□ 0.87
CHMP4A-201ENST00000347519 ARHGEF19Q8IW93 802 aa20.48■□□□□ 0.87
CHMP4A-201ENST00000347519 SPC24Q8NBT2 197 aa20.48■□□□□ 0.87
CHMP4A-201ENST00000347519 RABGGTAQ92696 567 aa20.48■□□□□ 0.87
CHMP4A-201ENST00000347519 TATDN2Q93075 761 aa20.48■□□□□ 0.87
CHMP4A-201ENST00000347519 TSPAN18Q96SJ8 248 aa20.48■□□□□ 0.87
CHMP4A-201ENST00000347519 PAAF1Q9BRP4 392 aa20.48■□□□□ 0.87
CHMP4A-201ENST00000347519 XYLT2Q9H1B5 865 aa20.48■□□□□ 0.87
CHMP4A-201ENST00000347519 APOBEC3GQ9HC16 384 aaKnown RBP20.48■□□□□ 0.87
CHMP4A-201ENST00000347519 FAM207AQ9NSI2 230 aaPredicted RBP20.48■□□□□ 0.87
CHMP4A-201ENST00000347519 TBC1D13Q9NVG8 400 aa20.48■□□□□ 0.87
CHMP4A-201ENST00000347519 AGAP1Q9UPQ3 857 aa20.48■□□□□ 0.87
CHMP4A-201ENST00000347519 ITIH6Q6UXX5 1313 aa20.48■□□□□ 0.87
CHMP4A-201ENST00000347519 ANO9A1A5B4 782 aa20.47■□□□□ 0.87
CHMP4A-201ENST00000347519 ZBBXA8MT70 800 aa20.47■□□□□ 0.87
CHMP4A-201ENST00000347519 EFCAB14O75071 495 aa20.47■□□□□ 0.87
CHMP4A-201ENST00000347519 KRT19P08727 400 aa20.47■□□□□ 0.87
CHMP4A-201ENST00000347519 CYP3A5P20815 502 aa20.47■□□□□ 0.87
CHMP4A-201ENST00000347519 MAGEA10P43363 369 aaPredicted RBP20.47■□□□□ 0.87
CHMP4A-201ENST00000347519 GRIK3Q13003 919 aa20.47■□□□□ 0.87
CHMP4A-201ENST00000347519 C9orf57Q5W0N0 161 aa20.47■□□□□ 0.87
CHMP4A-201ENST00000347519 PHLDB3Q6NSJ2 640 aa20.47■□□□□ 0.87
CHMP4A-201ENST00000347519 PSRC1Q6PGN9 363 aaPredicted RBP20.47■□□□□ 0.87
CHMP4A-201ENST00000347519 HERVK_113Q902F9 699 aa20.47■□□□□ 0.87
CHMP4A-201ENST00000347519 ITGA11Q9UKX5 1188 aa20.47■□□□□ 0.87
CHMP4A-201ENST00000347519 NR2E3Q9Y5X4 410 aa20.47■□□□□ 0.87
CHMP4A-201ENST00000347519 CASTOR2A6NHX0 329 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 TBKBP1A7MCY6 615 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 PIRO00625 290 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 DGKIO75912 1065 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 LRPAP1P30533 357 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 GOLGA8FQ08AF8 430 aa20.46■□□□□ 0.87
CHMP4A-201ENST00000347519 GOLGA8DPQ0D2H9 430 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms