RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ADGRA3Q8IWK6 1321 aa23.81■■□□□ 1.4
TRIM28-202ENST00000341753 MAPK4P31152 587 aa23.81■■□□□ 1.4
TRIM28-202ENST00000341753 RAD23BP54727 409 aa23.81■■□□□ 1.4
TRIM28-202ENST00000341753 RAB3IPQ96QF0 476 aaPredicted RBP23.81■■□□□ 1.4
TRIM28-202ENST00000341753 DCLK3Q9C098 648 aa23.81■■□□□ 1.4
TRIM28-202ENST00000341753 HSPBP1Q9NZL4 362 aa23.81■■□□□ 1.4
TRIM28-202ENST00000341753 CDH16O75309 829 aa23.8■■□□□ 1.4
TRIM28-202ENST00000341753 CBX6O95503 412 aa23.8■■□□□ 1.4
TRIM28-202ENST00000341753 PDHA1P08559 390 aa23.8■■□□□ 1.4
TRIM28-202ENST00000341753 LINGO3P0C6S8 592 aa23.8■■□□□ 1.4
TRIM28-202ENST00000341753 IL9RQ01113 521 aa23.8■■□□□ 1.4
TRIM28-202ENST00000341753 MKRN3Q13064 507 aaKnown RBP23.8■■□□□ 1.4
TRIM28-202ENST00000341753 SLC9A9Q8IVB4 645 aa23.8■■□□□ 1.4
TRIM28-202ENST00000341753 LBHD1Q9BQE6 289 aaPredicted RBP23.8■■□□□ 1.4
TRIM28-202ENST00000341753 TRAIPQ9BWF2 469 aa23.8■■□□□ 1.4
TRIM28-202ENST00000341753 TXLNGQ9NUQ3 528 aa23.8■■□□□ 1.4
TRIM28-202ENST00000341753 DYNC1LI1Q9Y6G9 523 aaKnown RBP23.8■■□□□ 1.4
TRIM28-202ENST00000341753 MYH11P35749 1972 aa23.8■■□□□ 1.4
TRIM28-202ENST00000341753 GAS8O95995 478 aa23.8■■□□□ 1.4
TRIM28-202ENST00000341753 ADRB2P07550 413 aa23.8■■□□□ 1.4
TRIM28-202ENST00000341753 CYP3A4P08684 503 aa23.8■■□□□ 1.4
TRIM28-202ENST00000341753 ZNF277Q9NRM2 450 aaPredicted RBP23.8■■□□□ 1.4
TRIM28-202ENST00000341753 TOPORSQ9NS56 1045 aaPredicted RBP23.8■■□□□ 1.4
TRIM28-202ENST00000341753 PHTF1Q9UMS5 762 aa23.8■■□□□ 1.4
TRIM28-202ENST00000341753 PEX11AO75192 247 aa23.79■■□□□ 1.4
TRIM28-202ENST00000341753 EPHB2P29323 1055 aa23.79■■□□□ 1.4
TRIM28-202ENST00000341753 STAT2P52630 851 aa23.79■■□□□ 1.4
TRIM28-202ENST00000341753 POLGP54098 1239 aaPredicted RBP23.79■■□□□ 1.4
TRIM28-202ENST00000341753 PPP2R5CQ13362 524 aa23.79■■□□□ 1.4
TRIM28-202ENST00000341753 SETDB1Q15047 1291 aa23.79■■□□□ 1.4
TRIM28-202ENST00000341753 PADI6Q6TGC4 694 aa23.79■■□□□ 1.4
TRIM28-202ENST00000341753 C4orf33Q8N1A6 199 aa23.79■■□□□ 1.4
TRIM28-202ENST00000341753 FAM13CQ8NE31 585 aa23.79■■□□□ 1.4
TRIM28-202ENST00000341753 TTC8Q8TAM2 541 aa23.79■■□□□ 1.4
TRIM28-202ENST00000341753 SLCO2A1Q92959 643 aa23.79■■□□□ 1.4
TRIM28-202ENST00000341753 SAAL1Q96ER3 474 aa23.79■■□□□ 1.4
TRIM28-202ENST00000341753 ZNF577Q9BSK1 485 aa23.79■■□□□ 1.4
TRIM28-202ENST00000341753 TMEM39BQ9GZU3 492 aa23.79■■□□□ 1.4
TRIM28-202ENST00000341753 ZBTB21Q9ULJ3 1066 aa23.79■■□□□ 1.4
TRIM28-202ENST00000341753 GRID1Q9ULK0 1009 aa23.79■■□□□ 1.4
TRIM28-202ENST00000341753 FAM47DPA6NHR8 397 aa23.79■■□□□ 1.4
TRIM28-202ENST00000341753 POC1B-GALNT4F8VUJ3 575 aa23.79■■□□□ 1.4
TRIM28-202ENST00000341753 FKBP1AP62942 108 aaKnown RBP23.79■■□□□ 1.4
TRIM28-202ENST00000341753 IRX1P78414 480 aaPredicted RBP23.79■■□□□ 1.4
TRIM28-202ENST00000341753 IZUMO3Q5VZ72 239 aa23.79■■□□□ 1.4
TRIM28-202ENST00000341753 STRA6Q9BX79 667 aa23.79■■□□□ 1.4
TRIM28-202ENST00000341753 CORO1CQ9ULV4 474 aaPredicted RBP23.79■■□□□ 1.4
TRIM28-202ENST00000341753 TMEM150BA6NC51 233 aa23.78■■□□□ 1.4
TRIM28-202ENST00000341753 RALAP11233 206 aa23.78■■□□□ 1.4
TRIM28-202ENST00000341753 PPP1R21Q6ZMI0 780 aa23.78■■□□□ 1.4
TRIM28-202ENST00000341753 LONP2Q86WA8 852 aa23.78■■□□□ 1.4
TRIM28-202ENST00000341753 CBWD2Q8IUF1 395 aa23.78■■□□□ 1.4
TRIM28-202ENST00000341753 LRRC37BQ96QE4 947 aa23.78■■□□□ 1.4
TRIM28-202ENST00000341753 RNPEPL1Q9HAU8 725 aa23.78■■□□□ 1.4
TRIM28-202ENST00000341753 UVRAGQ9P2Y5 699 aa23.78■■□□□ 1.4
TRIM28-202ENST00000341753 LGALS13Q9UHV8 139 aa23.78■■□□□ 1.4
TRIM28-202ENST00000341753 ENTPD3O75355 529 aa23.78■■□□□ 1.4
TRIM28-202ENST00000341753 GNAZP19086 355 aa23.78■■□□□ 1.4
TRIM28-202ENST00000341753 XXYLT1Q8NBI6 393 aa23.78■■□□□ 1.4
TRIM28-202ENST00000341753 KRT5P13647 590 aa23.77■■□□□ 1.4
TRIM28-202ENST00000341753 NUDCD1Q96RS6 583 aa23.77■■□□□ 1.4
TRIM28-202ENST00000341753 ATRNL1Q5VV63 1379 aa23.77■■□□□ 1.4
TRIM28-202ENST00000341753 SPDYE2BA6NHP3 402 aa23.77■■□□□ 1.4
TRIM28-202ENST00000341753 SPDYE6P0CI01 402 aa23.77■■□□□ 1.4
TRIM28-202ENST00000341753 PCK1P35558 622 aa23.77■■□□□ 1.4
TRIM28-202ENST00000341753 SKIV2L2P42285 1042 aaKnown RBP23.77■■□□□ 1.4
TRIM28-202ENST00000341753 CDR2Q01850 454 aa23.77■■□□□ 1.4
TRIM28-202ENST00000341753 ACVR2BQ13705 512 aa23.77■■□□□ 1.4
TRIM28-202ENST00000341753 ZNF365Q70YC5 407 aa23.77■■□□□ 1.4
TRIM28-202ENST00000341753 CPA5Q8WXQ8 436 aa23.77■■□□□ 1.4
TRIM28-202ENST00000341753 SHC3Q92529 594 aa23.77■■□□□ 1.4
TRIM28-202ENST00000341753 PLVAPQ9BX97 442 aa23.77■■□□□ 1.4
TRIM28-202ENST00000341753 LRMDAQ9H2I8 198 aa23.77■■□□□ 1.4
TRIM28-202ENST00000341753 ZFATQ9P243 1243 aa23.77■■□□□ 1.4
TRIM28-202ENST00000341753 ENTPD5O75356 428 aa23.76■■□□□ 1.39
TRIM28-202ENST00000341753 SSTR3P32745 418 aaPredicted RBP23.76■■□□□ 1.39
TRIM28-202ENST00000341753 ANKRD35Q8N283 1001 aa23.76■■□□□ 1.39
TRIM28-202ENST00000341753 SUPT20HQ8NEM7 779 aa23.76■■□□□ 1.39
TRIM28-202ENST00000341753 ZBTB10Q96DT7 871 aa23.76■■□□□ 1.39
TRIM28-202ENST00000341753 RBM15Q96T37 977 aaKnown RBP eCLIP23.76■■□□□ 1.397e-9■■□□□ 11.8
TRIM28-202ENST00000341753 TBC1D10AQ9BXI6 508 aa23.76■■□□□ 1.39
TRIM28-202ENST00000341753 ZNF646O15015 1829 aaPredicted RBP23.76■■□□□ 1.39
TRIM28-202ENST00000341753 EXOC1LA0A1B0GW35 172 aa23.76■■□□□ 1.39
TRIM28-202ENST00000341753 SORBS3O60504 671 aa23.76■■□□□ 1.39
TRIM28-202ENST00000341753 CALB2P22676 271 aa23.76■■□□□ 1.39
TRIM28-202ENST00000341753 TUBP50607 506 aa23.76■■□□□ 1.39
TRIM28-202ENST00000341753 MFAP3P55082 362 aa23.76■■□□□ 1.39
TRIM28-202ENST00000341753 EN1Q05925 392 aaPredicted RBP23.76■■□□□ 1.39
TRIM28-202ENST00000341753 AEBP2Q6ZN18 517 aaPredicted RBP23.76■■□□□ 1.39
TRIM28-202ENST00000341753 ATL2Q8NHH9 583 aa23.76■■□□□ 1.39
TRIM28-202ENST00000341753 PI4K2AQ9BTU6 479 aa23.76■■□□□ 1.39
TRIM28-202ENST00000341753 GPRC5CQ9NQ84 441 aa23.76■■□□□ 1.39
TRIM28-202ENST00000341753 KLHL11Q9NVR0 708 aa23.76■■□□□ 1.39
TRIM28-202ENST00000341753 ZNF70Q9UC06 446 aaPredicted RBP23.76■■□□□ 1.39
TRIM28-202ENST00000341753 ASMTLO95671 621 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 T-ENOLP0DO92 83 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 CCDC15Q0P6D6 951 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 DGKZQ13574 1117 aa23.75■■□□□ 1.39
TRIM28-202ENST00000341753 FASTKD3Q14CZ7 662 aaKnown RBP23.75■■□□□ 1.39
TRIM28-202ENST00000341753 PKN2Q16513 984 aaKnown RBP23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms