RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 PLEKHO2Q8TD55 490 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 IWS1Q96ST2 819 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 MIS12Q9H081 205 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 SLCO1B3Q9NPD5 702 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 OLFML3Q9NRN5 406 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 CASZ1Q86V15 1759 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 A8MUI8 341 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 IGF2BP3O00425 579 aaKnown RBP eCLIP12.67□□□□□ -0.38
USP1-201ENST00000339950 STAM2O75886 525 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 BAG2O95816 211 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 HOXA10P31260 410 aaPredicted RBP12.67□□□□□ -0.38
USP1-201ENST00000339950 PPP2R5CQ13362 524 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 SLMAPQ14BN4 828 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 RSBN1LQ6PCB5 846 aaPredicted RBP12.67□□□□□ -0.38
USP1-201ENST00000339950 FAM160B2Q86V87 743 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 ERICH1Q86X53 443 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 RBBP8NLQ8NC74 664 aaPredicted RBP12.67□□□□□ -0.38
USP1-201ENST00000339950 UBA3Q8TBC4 463 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 SMC6Q96SB8 1091 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 FEM1BQ9UK73 627 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 TARSP26639 723 aaKnown RBP12.67□□□□□ -0.38
USP1-201ENST00000339950 KCNJ2P63252 427 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 AMHR2Q16671 573 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 OR6B2Q6IFH4 312 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 GPD1LQ8N335 351 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 BSNDQ8WZ55 320 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 MKL1Q969V6 931 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 CYTH2Q99418 400 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 OSBPL7Q9BZF2 842 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 SPATS2LQ9NUQ6 558 aaKnown RBP12.67□□□□□ -0.38
USP1-201ENST00000339950 SEL1LQ9UBV2 794 aa12.67□□□□□ -0.38
USP1-201ENST00000339950 PHRF1Q9P1Y6 1649 aaKnown RBP12.66□□□□□ -0.38
USP1-201ENST00000339950 IGLV3-22A0A075B6J6 115 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 IGKV6D-41A0A0C4DH26 115 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 SMIM24O75264 130 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 LCA5LO95447 670 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 PGK2P07205 417 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 EIF3BP55884 814 aaKnown RBP12.66□□□□□ -0.38
USP1-201ENST00000339950 CXCL9Q07325 125 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 ISLR2Q6UXK2 745 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 VPS52Q8N1B4 723 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 PYROXD1Q8WU10 500 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 FAM151AQ8WW52 585 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 ERP27Q96DN0 273 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 GMCL1Q96IK5 515 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 CALR3Q96L12 384 aaKnown RBP12.66□□□□□ -0.38
USP1-201ENST00000339950 MTMR12Q9C0I1 747 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 NPHS2Q9NP85 383 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 GPATCH2LQ9NWQ4 482 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 UMODL1Q5DID0 1318 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 CFAP69A5D8W1 941 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 F8VP50 259 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 KCTD6Q8NC69 237 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 MAML1Q92585 1016 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 PPP1R36Q96LQ0 422 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 RUNDC3BQ96NL0 473 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 FAM49AQ9H0Q0 323 aaPredicted RBP12.66□□□□□ -0.38
USP1-201ENST00000339950 JPH1Q9HDC5 661 aaPredicted RBP12.66□□□□□ -0.38
USP1-201ENST00000339950 HERC5Q9UII4 1024 aaKnown RBP12.66□□□□□ -0.38
USP1-201ENST00000339950 CHMP2BQ9UQN3 213 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 ALS2Q96Q42 1657 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 GOLGA4Q13439 2230 aaKnown RBP12.66□□□□□ -0.38
USP1-201ENST00000339950 CCT8L1PA6NM43 557 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 TRPM8Q7Z2W7 1104 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 PARD3BQ8TEW8 1205 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 MCUR1Q96AQ8 359 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 STAMBPL1Q96FJ0 436 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 HES6Q96HZ4 224 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 HEXIM2Q96MH2 286 aaKnown RBP12.66□□□□□ -0.38
USP1-201ENST00000339950 WNT8AQ9H1J5 351 aa12.66□□□□□ -0.38
USP1-201ENST00000339950 LRP6O75581 1613 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 WNT10BO00744 389 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 ELF1P32519 619 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 YARSP54577 528 aaKnown RBP12.65□□□□□ -0.38
USP1-201ENST00000339950 POLE2P56282 527 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 FMO1Q01740 532 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 DARS2Q6PI48 645 aaKnown RBP12.65□□□□□ -0.38
USP1-201ENST00000339950 MICALL2Q8IY33 904 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 FAM149B1Q96BN6 582 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 FHDC1Q9C0D6 1143 aaPredicted RBP12.65□□□□□ -0.38
USP1-201ENST00000339950 DEFB129Q9H1M3 183 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 DDX3YO15523 660 aaKnown RBP12.65□□□□□ -0.38
USP1-201ENST00000339950 RIPK2O43353 540 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 TRAPPC3O43617 180 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 CCNE2O96020 404 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 SSTR1P30872 391 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 SLC8A1P32418 973 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 MRPS9P82933 396 aaKnown RBP12.65□□□□□ -0.38
USP1-201ENST00000339950 NCOA4Q13772 614 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 IL31Q6EBC2 164 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 PPM1NQ8N819 430 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 CEP120Q8N960 986 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 PDCD2LQ9BRP1 358 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 INPP5FQ9Y2H2 1132 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 STK24Q9Y6E0 443 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 FAM187AA6NFU0 413 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 EIF3DO15371 548 aaKnown RBP eCLIP12.65□□□□□ -0.383e-12■■□□□ 13.3
USP1-201ENST00000339950 PSAPP07602 524 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 TCF4P15884 667 aa12.65□□□□□ -0.38
USP1-201ENST00000339950 CCND2P30279 289 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms