RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 LACTBL1A8MY62 500 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 SEPT4O43236 478 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 FTCDO95954 541 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 ASS1P00966 412 aaKnown RBP14.37□□□□□ -0.11
HMGB1-202ENST00000339872 CALCAP01258 141 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 NFICP08651 508 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 TMEM253P0C7T8 217 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 FMO1Q01740 532 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 CDR2Q01850 454 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 CACNB2Q08289 660 aaPredicted RBP14.37□□□□□ -0.11
HMGB1-202ENST00000339872 ZNF710Q8N1W2 664 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 CAPZA3Q96KX2 299 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 PCDHB18PQ96TA0 734 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 SPC25Q9HBM1 224 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 CREBZFQ9NS37 354 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 NCANO14594 1321 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 A0A0A6YYK5 440 aaPredicted RBP14.37□□□□□ -0.11
HMGB1-202ENST00000339872 RARBP10826 455 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 GNAT1P11488 350 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 ELNP15502 786 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 RBM10P98175 930 aaKnown RBP14.37□□□□□ -0.11
HMGB1-202ENST00000339872 KYAT1Q16773 422 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 TEX35Q5T0J7 233 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 JADE1Q6IE81 842 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 REM2Q8IYK8 340 aaPredicted RBP14.37□□□□□ -0.11
HMGB1-202ENST00000339872 MTG1Q9BT17 334 aaPredicted RBP14.37□□□□□ -0.11
HMGB1-202ENST00000339872 THAP2Q9H0W7 228 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 PCDHB4Q9Y5E5 795 aa14.37□□□□□ -0.11
HMGB1-202ENST00000339872 SCN10AQ9Y5Y9 1956 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 ANKRD62A6NC57 917 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 ZNF185O15231 689 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 MEFVO15553 781 aaPredicted RBP14.36□□□□□ -0.11
HMGB1-202ENST00000339872 KPNA6O60684 536 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 FTLP02792 175 aaPredicted RBP14.36□□□□□ -0.11
HMGB1-202ENST00000339872 DARSP14868 501 aaKnown RBP14.36□□□□□ -0.11
HMGB1-202ENST00000339872 ACO1P21399 889 aaKnown RBP14.36□□□□□ -0.11
HMGB1-202ENST00000339872 SGSM1Q2NKQ1 1148 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 CXCL17Q6UXB2 119 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 RFFLQ8WZ73 363 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 DDX1Q92499 740 aaKnown RBP14.36□□□□□ -0.11
HMGB1-202ENST00000339872 ANKRD7Q92527 254 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 GOLGA1Q92805 767 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 PSMB7Q99436 277 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 TLR10Q9BXR5 811 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 ISCUQ9H1K1 167 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 RNF186Q9NXI6 227 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 HYOU1Q9Y4L1 999 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 RTN2O75298 545 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 TRPA1O75762 1119 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 NPTXRO95502 500 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 KRT19P08727 400 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 HOXC8P31273 242 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 RALGAPA2Q2PPJ7 1873 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 ZNF699Q32M78 642 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 SLC10A6Q3KNW5 377 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 DCAF4L1Q3SXM0 396 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 TMEM270Q6UE05 265 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 TPCN2Q8NHX9 752 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 ARHGEF26Q96DR7 871 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 ACAP3Q96P50 834 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 OSBPL9Q96SU4 736 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 UPF3AQ9H1J1 476 aaKnown RBP14.36□□□□□ -0.11
HMGB1-202ENST00000339872 OSGEPQ9NPF4 335 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 PCDHB2Q9Y5E7 798 aa14.36□□□□□ -0.11
HMGB1-202ENST00000339872 CTAGE15A4D2H0 777 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 MYCNP04198 464 aaPredicted RBP14.35□□□□□ -0.11
HMGB1-202ENST00000339872 CTAGE8P0CG41 777 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 PRKAR2AP13861 404 aaKnown RBP14.35□□□□□ -0.11
HMGB1-202ENST00000339872 EIF4BP23588 611 aaKnown RBP14.35□□□□□ -0.11
HMGB1-202ENST00000339872 CCND3P30281 292 aaPredicted RBP14.35□□□□□ -0.11
HMGB1-202ENST00000339872 HOXA11P31270 313 aaPredicted RBP14.35□□□□□ -0.11
HMGB1-202ENST00000339872 DNA2P51530 1060 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 BPIFB4P59827 614 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 RSRC2Q7L4I2 434 aaKnown RBP14.35□□□□□ -0.11
HMGB1-202ENST00000339872 CTAGE6Q86UF2 777 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 CTAGE4Q8IX94 777 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 RBBP8NLQ8NC74 664 aaPredicted RBP14.35□□□□□ -0.11
HMGB1-202ENST00000339872 SLC35G2Q8TBE7 412 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 CAGE1Q8TC20 777 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 TMEM40Q8WWA1 233 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 NIF3L1Q9GZT8 377 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 GOLPH3Q9H4A6 298 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 ASB7Q9H672 318 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 TSKSQ9UJT2 592 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 PACSIN2Q9UNF0 486 aaPredicted RBP14.35□□□□□ -0.11
HMGB1-202ENST00000339872 MROH7Q68CQ1 1323 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 GZMAP12544 262 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 TCP1P17987 556 aaKnown RBP14.35□□□□□ -0.11
HMGB1-202ENST00000339872 CXCR5P32302 372 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 GRM5P41594 1212 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 POU5F1Q01860 360 aaKnown RBP14.35□□□□□ -0.11
HMGB1-202ENST00000339872 SNX17Q15036 470 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 MEI1Q5TIA1 1274 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 NOTUMQ6P988 496 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 SLC27A1Q6PCB7 646 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 SCARA5Q6ZMJ2 495 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 APBB1IPQ7Z5R6 666 aaPredicted RBP14.35□□□□□ -0.11
HMGB1-202ENST00000339872 TMEM130Q8N3G9 435 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 C1orf127Q8N9H9 656 aa14.35□□□□□ -0.11
HMGB1-202ENST00000339872 CD99L2Q8TCZ2 262 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms