RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 TYRO3Q06418 890 aa12.89□□□□□ -0.35
SPTLC1-202ENST00000337841 ENPEPQ07075 957 aa12.89□□□□□ -0.35
SPTLC1-202ENST00000337841 NAB2Q15742 525 aa12.89□□□□□ -0.35
SPTLC1-202ENST00000337841 WDR49Q8IV35 697 aa12.89□□□□□ -0.35
SPTLC1-202ENST00000337841 ZC3H3Q8IXZ2 948 aaKnown RBP12.89□□□□□ -0.35
SPTLC1-202ENST00000337841 SLC39A11Q8N1S5 342 aa12.89□□□□□ -0.35
SPTLC1-202ENST00000337841 SPDYE1Q8NFV5 336 aaPredicted RBP12.89□□□□□ -0.35
SPTLC1-202ENST00000337841 PARD3BQ8TEW8 1205 aa12.89□□□□□ -0.35
SPTLC1-202ENST00000337841 EEF2KMTQ96G04 330 aa12.89□□□□□ -0.35
SPTLC1-202ENST00000337841 IGSF21Q96ID5 467 aa12.89□□□□□ -0.35
SPTLC1-202ENST00000337841 INTS13Q9NVM9 706 aa12.89□□□□□ -0.35
SPTLC1-202ENST00000337841 ARMCX3Q9UH62 379 aaPredicted RBP12.89□□□□□ -0.35
SPTLC1-202ENST00000337841 PRG3Q9Y2Y8 225 aaPredicted RBP12.89□□□□□ -0.35
SPTLC1-202ENST00000337841 PODXLO00592 558 aa12.88□□□□□ -0.35
SPTLC1-202ENST00000337841 IKBKBO14920 756 aa12.88□□□□□ -0.35
SPTLC1-202ENST00000337841 TRAPPC3O43617 180 aa12.88□□□□□ -0.35
SPTLC1-202ENST00000337841 PHACTR2O75167 634 aa12.88□□□□□ -0.35
SPTLC1-202ENST00000337841 B3GAT3O94766 335 aa12.88□□□□□ -0.35
SPTLC1-202ENST00000337841 PBX3P40426 434 aa12.88□□□□□ -0.35
SPTLC1-202ENST00000337841 CLCNKBP51801 687 aa12.88□□□□□ -0.35
SPTLC1-202ENST00000337841 RBP5P82980 135 aa12.88□□□□□ -0.35
SPTLC1-202ENST00000337841 ELAVL2Q12926 359 aaKnown RBP12.88□□□□□ -0.35
SPTLC1-202ENST00000337841 UPP1Q16831 310 aa12.88□□□□□ -0.35
SPTLC1-202ENST00000337841 CCDC40Q4G0X9 1142 aa12.88□□□□□ -0.35
SPTLC1-202ENST00000337841 FRMD5Q7Z6J6 570 aa12.88□□□□□ -0.35
SPTLC1-202ENST00000337841 DDX53Q86TM3 631 aaKnown RBP12.88□□□□□ -0.35
SPTLC1-202ENST00000337841 POP1Q99575 1024 aaKnown RBP12.88□□□□□ -0.35
SPTLC1-202ENST00000337841 CGRRF1Q99675 332 aa12.88□□□□□ -0.35
SPTLC1-202ENST00000337841 LMAN2LQ9H0V9 348 aa12.88□□□□□ -0.35
SPTLC1-202ENST00000337841 TTYH1Q9H313 450 aaPredicted RBP12.88□□□□□ -0.35
SPTLC1-202ENST00000337841 TUBGCP4Q9UGJ1 667 aa12.88□□□□□ -0.35
SPTLC1-202ENST00000337841 LZTS1Q9Y250 596 aa12.88□□□□□ -0.35
SPTLC1-202ENST00000337841 NUB1Q9Y5A7 615 aa12.88□□□□□ -0.35
SPTLC1-202ENST00000337841 SYCE3A1L190 88 aa12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 B4GALT3O60512 393 aa12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 ITGB1P05556 798 aa12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 FXR1P51114 621 aaKnown RBP eCLIP12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 WNT7BP56706 349 aa12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 SOX4Q06945 474 aaPredicted RBP12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 GRIN2CQ14957 1233 aa12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 PTPROQ16827 1216 aa12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 ZSCAN23Q3MJ62 389 aa12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 CREBRFQ8IUR6 639 aa12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 FAM114A1Q8IWE2 563 aa12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 EFCAB13Q8IY85 973 aa12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 ENOX1Q8TC92 643 aaKnown RBP12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 SPPL3Q8TCT6 385 aa12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 MICAL1Q8TDZ2 1067 aa12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 RABGGTAQ92696 567 aa12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 PRDM12Q9H4Q4 367 aa12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 GOLGA2P5Q9HBQ8 144 aa12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 ALG13Q9NP73 1137 aaKnown RBP12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 MAGEC2Q9UBF1 373 aaPredicted RBP12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 ADAM28Q9UKQ2 775 aa12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 ITGA11Q9UKX5 1188 aa12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 AGAP1Q9UPQ3 857 aa12.87□□□□□ -0.35
SPTLC1-202ENST00000337841 TMEM189-UBE2V1I3L0A0 370 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 RFXAPO00287 272 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 PIRO00625 290 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 LPXNO60711 386 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 KRT19P08727 400 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 GTF2H1P32780 548 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 PNPLA4P41247 253 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 VASPP50552 380 aaPredicted RBP12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 GUCY2FP51841 1108 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 MCCD1P59942 119 aaPredicted RBP12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 CLDN10P78369 228 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 BFSP1Q12934 665 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 BIRC3Q13489 604 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 TRPC3Q13507 836 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 C9orf57Q5W0N0 161 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 LMBRD2Q68DH5 695 aaPredicted RBP12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 PDE12Q6L8Q7 609 aaKnown RBP12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 TRAPPC11Q7Z392 1133 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 SPRED2Q7Z698 418 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 DEFB123Q8N688 67 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 OR5B17Q8NGF7 314 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 POF1BQ8WVV4 589 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 BORCS6Q96GS4 357 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 FAM161BQ96MY7 647 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 GAS2L1Q99501 681 aaPredicted RBP12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 PAAF1Q9BRP4 392 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 DNAJC25Q9H1X3 360 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 THAP9Q9H5L6 903 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 LMCD1Q9NZU5 365 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 SSX2IPQ9Y2D8 614 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 TRIOBPQ9H2D6 2365 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 COL4A6Q14031 1691 aa12.86□□□□□ -0.35
SPTLC1-202ENST00000337841 SF3B1O75533 1304 aaKnown RBP eCLIP12.86□□□□□ -0.354e-7■■■■■ 125.7
SPTLC1-202ENST00000337841 ANO9A1A5B4 782 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 ARHGEF37A1IGU5 675 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 LRRIQ3A6PVS8 624 aaPredicted RBP12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 SMTNL1A8MU46 457 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 GRM6O15303 877 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 KIF4AO95239 1232 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 CXCL14O95715 111 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 CAVIN2O95810 425 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 ITGB3P05106 788 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 DLG4P78352 724 aa12.85□□□□□ -0.35
SPTLC1-202ENST00000337841 MYO1EQ12965 1108 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms