RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 HUS1O60921 280 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 SNRPAP09012 282 aaKnown RBP10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 ACADSBP45954 432 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 CACNB1Q02641 598 aaPredicted RBP10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 TNIP3Q96KP6 325 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 AP5M1Q9H0R1 490 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 ANKEF1Q9NU02 776 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 TEKT2Q9UIF3 430 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 SUFUQ9UMX1 484 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 ZNF335Q9H4Z2 1342 aaPredicted RBP10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 KANSL1LA0AUZ9 987 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 FGFR4P22455 802 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 TYK2P29597 1187 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 CALB2P22676 271 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 SNRNP35Q16560 246 aaKnown RBP10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 KLHDC7AQ5VTJ3 777 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 SP8Q8IXZ3 490 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 CEP70Q8NHQ1 597 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 PRDM16Q9HAZ2 1276 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 SLC40A1Q9NP59 571 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 WDR91A4D1P6 747 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 TRPC5OSA6NMA1 111 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 DTNBO60941 627 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 SNUPNO95149 360 aaKnown RBP10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 KCNA3P22001 575 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 EAPPQ56P03 285 aaPredicted RBP10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 HHIPL2Q6UWX4 724 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 ZSWIM1Q9BR11 485 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 NYAP2Q9P242 653 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 ZC3H7BQ9UGR2 993 aaKnown RBP10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 RPL26L1Q9UNX3 145 aaKnown RBP10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 LOXHD1Q8IVV2 1947 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 SALL1Q9NSC2 1324 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 MAGEA13PA6NCF6 341 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 PJA2O43164 708 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 ZBTB24O43167 697 aaPredicted RBP10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 ELMSAN1Q6PJG2 1045 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 THNSL1Q8IYQ7 743 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 C11orf70Q9BRQ4 267 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 POLR3FQ9H1D9 316 aaPredicted RBP10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 NGRNQ9NPE2 291 aaKnown RBP10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 EHD2Q9NZN4 543 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 GRID1Q9ULK0 1009 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 MAPTP10636 758 aaKnown RBP10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 CD58P19256 250 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 HOXA13P31271 388 aaPredicted RBP10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 CRKP46108 304 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 SF3A3Q12874 501 aaKnown RBP eCLIP10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 APOBEC3FQ8IUX4 373 aaKnown RBP10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 ASAP3Q8TDY4 903 aa10.82□□□□□ -0.68
CCDC88A-202ENST00000336838 ANGPT2O15123 496 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 HSD17B4P51659 736 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 YWHAHQ04917 246 aaPredicted RBP10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 ZNF568Q3ZCX4 644 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 RHPN2Q8IUC4 686 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 ATXN2LQ8WWM7 1075 aaKnown RBP10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 DCTN4Q9UJW0 460 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 C1orf167Q5SNV9 1468 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 RNF103-CHMP3A0A140T963 221 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 E9PMD0 336 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 KYNUQ16719 465 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 ZNF34Q8IZ26 560 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 ZNF710Q8N1W2 664 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 ZNF555Q8NEP9 628 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 POP5Q969H6 163 aaKnown RBP10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 CD209Q9NNX6 404 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 STX18Q9P2W9 335 aaKnown RBP10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 ATRNO75882 1429 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 FDPSP14324 419 aaKnown RBP10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 MTERF2Q49AM1 385 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 DPY19L2Q6NUT2 758 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 RNF169Q8NCN4 708 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 ZNF341Q9BYN7 854 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 EPS8L2Q9H6S3 715 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 NAGPAQ9UK23 515 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 PLA2G4AP47712 749 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 ANTXR2P58335 489 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 FAM9CQ8IZT9 166 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 PPM1NQ8N819 430 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 NOA1Q8NC60 698 aaKnown RBP10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 MANSC1Q9H8J5 431 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 TMBIM4Q9HC24 238 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 AGPAT5Q9NUQ2 364 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 FLT1P17948 1338 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 FSBPO95073 299 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 GRM1Q13255 1194 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 EPAS1Q99814 870 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 HINFPQ9BQA5 517 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 SMYD3Q9H7B4 428 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 NOD2Q9HC29 1040 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 KIF17Q9P2E2 1029 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 SLC13A4Q9UKG4 626 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 FDFT1P37268 417 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 EIF3EP60228 445 aaKnown RBP10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 TTLL4Q14679 1199 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 GJB4Q9NTQ9 266 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 A0A1B0GW55 424 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 CFLARO15519 480 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 DUX4L2P0CJ85 424 aa10.81□□□□□ -0.68
CCDC88A-202ENST00000336838 DUX4L3P0CJ86 424 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms