RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 STAMBPO95630 424 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 ABL1P00519 1130 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 THP07101 528 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 PRLRP16471 622 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 ZNF135P52742 658 aaPredicted RBP7.28□□□□□ -1.24
SF3B1-201ENST00000335508 RPL10AP62906 217 aaKnown RBP7.28□□□□□ -1.24
SF3B1-201ENST00000335508 CYP24A1Q07973 514 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 CUL2Q13617 745 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 PIGHQ14442 188 aaPredicted RBP7.28□□□□□ -1.24
SF3B1-201ENST00000335508 E4F1Q66K89 784 aaPredicted RBP7.28□□□□□ -1.24
SF3B1-201ENST00000335508 UBLCP1Q8WVY7 318 aaPredicted RBP7.28□□□□□ -1.24
SF3B1-201ENST00000335508 CAPNS2Q96L46 248 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 CALCOCO1Q9P1Z2 691 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 POLR3GO15318 223 aaPredicted RBP7.28□□□□□ -1.24
SF3B1-201ENST00000335508 RGS16O15492 202 aaPredicted RBP7.28□□□□□ -1.24
SF3B1-201ENST00000335508 CYP26A1O43174 497 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 FTCDO95954 541 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 SPATA31C1P0DKV0 1188 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 MTA1Q13330 715 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 KIZQ2M2Z5 673 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 ABHD15Q6UXT9 468 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 TTC1Q99614 292 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 DUSP9Q99956 384 aaKnown RBP7.28□□□□□ -1.24
SF3B1-201ENST00000335508 LBHD1Q9BQE6 289 aaPredicted RBP7.28□□□□□ -1.24
SF3B1-201ENST00000335508 SEMA6BQ9H3T3 888 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 Q9Y3F1 56 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 UMODL1Q5DID0 1318 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 ZDBF2Q9HCK1 2354 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 CPB1P15086 417 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 CTNNA1P35221 906 aaKnown RBP7.28□□□□□ -1.24
SF3B1-201ENST00000335508 LRRC52Q8N7C0 313 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 TTC16Q8NEE8 873 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 FTHL17Q9BXU8 183 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 VAV3Q9UKW4 847 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 SNX12Q9UMY4 172 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 TRIM17Q9Y577 477 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 HMGCRP04035 888 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 SLURP2P0DP57 97 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 MAP2K2P36507 400 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 HSDL1Q3SXM5 330 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 NDUFAF2Q8N183 169 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.28□□□□□ -1.248e-6■■□□□ 11.8
SF3B1-201ENST00000335508 A0A087X0T9 212 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 AP3B1O00203 1094 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 ENC1O14682 589 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 SEPT4O43236 478 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 PAEPP09466 180 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 FAM228BP0C875 321 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 CAPN2P17655 700 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 THPOP40225 353 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 VPS41P49754 854 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 MRPS9P82933 396 aaKnown RBP7.28□□□□□ -1.24
SF3B1-201ENST00000335508 ZBTB16Q05516 673 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 ITIH3Q06033 890 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 NFIL3Q16649 462 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 PPP6R3Q5H9R7 873 aaPredicted RBP7.28□□□□□ -1.24
SF3B1-201ENST00000335508 MICAL1Q8TDZ2 1067 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 BRI3BPQ8WY22 251 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 RUBCNQ92622 972 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 PPP1R16BQ96T49 567 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 NIFKQ9BYG3 293 aaKnown RBP7.28□□□□□ -1.24
SF3B1-201ENST00000335508 AGPAT5Q9NUQ2 364 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 SETD4Q9NVD3 440 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 IPO11Q9UI26 975 aaKnown RBP7.28□□□□□ -1.24
SF3B1-201ENST00000335508 LTN1O94822 1766 aa7.28□□□□□ -1.24
SF3B1-201ENST00000335508 EGFRP00533 1210 aa7.27□□□□□ -1.24
SF3B1-201ENST00000335508 ADCYAP1R1P41586 468 aa7.27□□□□□ -1.24
SF3B1-201ENST00000335508 CCZ1BP86790 482 aa7.27□□□□□ -1.24
SF3B1-201ENST00000335508 CCZ1P86791 482 aaPredicted RBP7.27□□□□□ -1.24
SF3B1-201ENST00000335508 PTPN11Q06124 597 aaPredicted RBP7.27□□□□□ -1.24
SF3B1-201ENST00000335508 BTBD8Q5XKL5 378 aa7.27□□□□□ -1.24
SF3B1-201ENST00000335508 CASC4Q6P4E1 433 aa7.27□□□□□ -1.24
SF3B1-201ENST00000335508 MOB2Q70IA6 237 aa7.27□□□□□ -1.24
SF3B1-201ENST00000335508 ANO5Q75V66 913 aa7.27□□□□□ -1.24
SF3B1-201ENST00000335508 CCNYQ8ND76 341 aa7.27□□□□□ -1.24
SF3B1-201ENST00000335508 SHC3Q92529 594 aa7.27□□□□□ -1.24
SF3B1-201ENST00000335508 CHP1Q99653 195 aa7.27□□□□□ -1.24
SF3B1-201ENST00000335508 ZWILCHQ9H900 591 aa7.27□□□□□ -1.24
SF3B1-201ENST00000335508 ARHGAP28Q9P2N2 729 aa7.27□□□□□ -1.24
SF3B1-201ENST00000335508 ITGA11Q9UKX5 1188 aa7.27□□□□□ -1.24
SF3B1-201ENST00000335508 AK9Q5TCS8 1911 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 COL16A1Q07092 1604 aaPredicted RBP7.27□□□□□ -1.25
SF3B1-201ENST00000335508 DUOX1Q9NRD9 1551 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 A0A0B4J269 797 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 PHF20L1A8MW92 1017 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 FOXN3O00409 490 aaPredicted RBP7.27□□□□□ -1.25
SF3B1-201ENST00000335508 TADA2AO75478 443 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 FBXO21O94952 628 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 RAG1P15918 1043 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 RECQLP46063 649 aaPredicted RBP7.27□□□□□ -1.25
SF3B1-201ENST00000335508 LHX1P48742 406 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 C6orf163Q5TEZ5 329 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 PALM2Q8IXS6 379 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 ZNF668Q96K58 619 aaPredicted RBP7.27□□□□□ -1.25
SF3B1-201ENST00000335508 FMO2Q99518 471 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.27□□□□□ -1.253e-8■□□□□ 10.4
SF3B1-201ENST00000335508 TRPV6Q9H1D0 765 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 PPP1R11O60927 126 aaPredicted RBP7.27□□□□□ -1.25
SF3B1-201ENST00000335508 RALAP11233 206 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 CASP4P49662 377 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 94.8 ms