RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 C3orf58Q8NDZ4 430 aa17.23■□□□□ 0.35
CCDC28A-201ENST00000332797 AUTS2Q8WXX7 1259 aa17.23■□□□□ 0.35
CCDC28A-201ENST00000332797 GPR62Q9BZJ7 368 aa17.23■□□□□ 0.35
CCDC28A-201ENST00000332797 PDE11AQ9HCR9 933 aa17.23■□□□□ 0.35
CCDC28A-201ENST00000332797 NGRNQ9NPE2 291 aaKnown RBP17.23■□□□□ 0.35
CCDC28A-201ENST00000332797 TRAF3IP3Q9Y228 551 aa17.23■□□□□ 0.35
CCDC28A-201ENST00000332797 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.23■□□□□ 0.35
CCDC28A-201ENST00000332797 HIDE1A8MVS5 230 aa17.22■□□□□ 0.35
CCDC28A-201ENST00000332797 TMEM189-UBE2V1I3L0A0 370 aa17.22■□□□□ 0.35
CCDC28A-201ENST00000332797 CTSAP10619 480 aa17.22■□□□□ 0.35
CCDC28A-201ENST00000332797 IGFBP6P24592 240 aaPredicted RBP17.22■□□□□ 0.35
CCDC28A-201ENST00000332797 TFAMQ00059 246 aaKnown RBP17.22■□□□□ 0.35
CCDC28A-201ENST00000332797 STIM1Q13586 685 aa17.22■□□□□ 0.35
CCDC28A-201ENST00000332797 BMS1Q14692 1282 aaKnown RBP17.22■□□□□ 0.35
CCDC28A-201ENST00000332797 SKIV2LQ15477 1246 aaKnown RBP17.22■□□□□ 0.35
CCDC28A-201ENST00000332797 ADGRD2Q7Z7M1 963 aa17.22■□□□□ 0.35
CCDC28A-201ENST00000332797 SLC9A9Q8IVB4 645 aa17.22■□□□□ 0.35
CCDC28A-201ENST00000332797 ADSSL1Q8N142 457 aa17.22■□□□□ 0.35
CCDC28A-201ENST00000332797 PPP2R3CQ969Q6 453 aa17.22■□□□□ 0.35
CCDC28A-201ENST00000332797 DMAC2Q9NW81 257 aa17.22■□□□□ 0.35
CCDC28A-201ENST00000332797 EYSQ5T1H1 3165 aa17.22■□□□□ 0.35
CCDC28A-201ENST00000332797 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.21■□□□□ 0.35
CCDC28A-201ENST00000332797 CXCL14O95715 111 aa17.21■□□□□ 0.35
CCDC28A-201ENST00000332797 EFEMP2O95967 443 aa17.21■□□□□ 0.35
CCDC28A-201ENST00000332797 URODP06132 367 aa17.21■□□□□ 0.35
CCDC28A-201ENST00000332797 BMP6P22004 513 aa17.21■□□□□ 0.35
CCDC28A-201ENST00000332797 NR2F2P24468 414 aa17.21■□□□□ 0.35
CCDC28A-201ENST00000332797 LRPAP1P30533 357 aa17.21■□□□□ 0.35
CCDC28A-201ENST00000332797 CYP24A1Q07973 514 aa17.21■□□□□ 0.35
CCDC28A-201ENST00000332797 SURF1Q15526 300 aa17.21■□□□□ 0.35
CCDC28A-201ENST00000332797 ZCWPW2Q504Y3 356 aa17.21■□□□□ 0.35
CCDC28A-201ENST00000332797 CEP135Q66GS9 1140 aa17.21■□□□□ 0.35
CCDC28A-201ENST00000332797 LMBRD2Q68DH5 695 aaPredicted RBP17.21■□□□□ 0.35
CCDC28A-201ENST00000332797 RBM23Q86U06 439 aaKnown RBP17.21■□□□□ 0.35
CCDC28A-201ENST00000332797 NT5DC4Q86YG4 428 aa17.21■□□□□ 0.35
CCDC28A-201ENST00000332797 RNF168Q8IYW5 571 aaPredicted RBP17.21■□□□□ 0.35
CCDC28A-201ENST00000332797 FAM84AQ96KN4 292 aa17.21■□□□□ 0.35
CCDC28A-201ENST00000332797 B3GALT6Q96L58 329 aa17.21■□□□□ 0.35
CCDC28A-201ENST00000332797 DPP3Q9NY33 737 aa17.21■□□□□ 0.35
CCDC28A-201ENST00000332797 NUB1Q9Y5A7 615 aa17.21■□□□□ 0.35
CCDC28A-201ENST00000332797 I3L4J1 428 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 C2CD2LO14523 706 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 MBD3O95983 291 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 DLATP10515 647 aaKnown RBP17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 CD44P16070 742 aaKnown RBP17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 MCM4P33991 863 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 BRCC3P46736 316 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 NRIP1P48552 1158 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 GLUD2P49448 558 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 CASP4P49662 377 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 ELAVL2Q12926 359 aaKnown RBP17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 MYBPC2Q14324 1141 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 PTPN14Q15678 1187 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 NFIL3Q16649 462 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 USP41Q3LFD5 358 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 FAM171A1Q5VUB5 890 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 KLHL10Q6JEL2 608 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 KIAA1841Q6NSI8 718 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 CD300LGQ6UXG3 332 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 TRIML1Q8N9V2 468 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 TMEM174Q8WUU8 243 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 CCDC127Q96BQ5 260 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 TSG101Q99816 390 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 IGFLR1Q9H665 355 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 TLE6Q9H808 572 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 MRPL17Q9NRX2 175 aaKnown RBP17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 FRMD4BQ9Y2L6 1034 aa17.2■□□□□ 0.34
CCDC28A-201ENST00000332797 C2orf71A6NGG8 1288 aa17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 PSMA7O14818 248 aa17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 PPEF2O14830 753 aa17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 PER2O15055 1255 aa17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 TRAPPC3O43617 180 aa17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 TMEM191BP0C7N4 346 aa17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 RPL13P26373 211 aaKnown RBP17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 GTF2F1P35269 517 aaKnown RBP eCLIP17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 PPP1R2P41236 205 aa17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 HYAL1Q12794 435 aa17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 PTPRJQ12913 1337 aa17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 PSMD6Q15008 389 aa17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 EDRF1Q3B7T1 1238 aa17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 C9orf57Q5W0N0 161 aa17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 CENPPQ6IPU0 288 aa17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 CEP57Q86XR8 500 aa17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 MRPL43Q8N983 215 aaKnown RBP17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 CACTINQ8WUQ7 758 aaKnown RBP17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 MFSD14AQ96MC6 490 aa17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 FNBP1Q96RU3 617 aa17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 MTMR12Q9C0I1 747 aa17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 COL6A3P12111 3177 aa17.19■□□□□ 0.34
CCDC28A-201ENST00000332797 TRIM49BA6NDI0 452 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 PPP1R3GB7ZBB8 358 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 TNNI1P19237 187 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 DSG1Q02413 1049 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 ADAM9Q13443 819 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 ANKRD40Q6AI12 368 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 WDR49Q8IV35 697 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 RIN2Q8WYP3 895 aaPredicted RBP17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 DHTKD1Q96HY7 919 aaPredicted RBP17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 ANKRD36BP1Q96IX9 119 aa17.18■□□□□ 0.34
CCDC28A-201ENST00000332797 CGRRF1Q99675 332 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms