RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 SPDYCQ5MJ68 293 aa11.19□□□□□ -0.62
COL3A1-202ENST00000317840 LLGL2Q6P1M3 1020 aa11.19□□□□□ -0.62
COL3A1-202ENST00000317840 ATXN2LQ8WWM7 1075 aaKnown RBP11.19□□□□□ -0.62
COL3A1-202ENST00000317840 CRYGNQ8WXF5 182 aa11.19□□□□□ -0.62
COL3A1-202ENST00000317840 TRAIPQ9BWF2 469 aa11.19□□□□□ -0.62
COL3A1-202ENST00000317840 DMAC2Q9NW81 257 aa11.19□□□□□ -0.62
COL3A1-202ENST00000317840 NOP53Q9NZM5 478 aaKnown RBP11.19□□□□□ -0.62
COL3A1-202ENST00000317840 ADAM22Q9P0K1 906 aa11.19□□□□□ -0.62
COL3A1-202ENST00000317840 GOLGA8SH3BPF8 625 aa11.19□□□□□ -0.62
COL3A1-202ENST00000317840 GOLGA8MH3BSY2 632 aa11.19□□□□□ -0.62
COL3A1-202ENST00000317840 TTC4O95801 387 aa11.19□□□□□ -0.62
COL3A1-202ENST00000317840 PIK3CAP42336 1068 aa11.19□□□□□ -0.62
COL3A1-202ENST00000317840 RRP1BQ14684 758 aaKnown RBP11.19□□□□□ -0.62
COL3A1-202ENST00000317840 BRDTQ58F21 947 aaPredicted RBP11.19□□□□□ -0.62
COL3A1-202ENST00000317840 DPY19L2Q6NUT2 758 aa11.19□□□□□ -0.62
COL3A1-202ENST00000317840 PRUNE1Q86TP1 453 aa11.19□□□□□ -0.62
COL3A1-202ENST00000317840 ATL2Q8NHH9 583 aa11.19□□□□□ -0.62
COL3A1-202ENST00000317840 PRCCQ92733 491 aaPredicted RBP11.19□□□□□ -0.62
COL3A1-202ENST00000317840 KREMEN1Q96MU8 473 aa11.19□□□□□ -0.62
COL3A1-202ENST00000317840 RIT2Q99578 217 aa11.19□□□□□ -0.62
COL3A1-202ENST00000317840 FEM1BQ9UK73 627 aa11.19□□□□□ -0.62
COL3A1-202ENST00000317840 SUFUQ9UMX1 484 aa11.19□□□□□ -0.62
COL3A1-202ENST00000317840 PCDHB4Q9Y5E5 795 aa11.19□□□□□ -0.62
COL3A1-202ENST00000317840 ABCA3Q99758 1704 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 P4HA2O15460 535 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 CDH16O75309 829 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 ADRB2P07550 413 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 FMO1Q01740 532 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 ZBTB16Q05516 673 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 PPP1R21Q6ZMI0 780 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 DAW1Q8N136 415 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 SLC16A10Q8TF71 515 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 SERPINB12Q96P63 405 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 RBM15Q96T37 977 aaKnown RBP eCLIP11.18□□□□□ -0.62
COL3A1-202ENST00000317840 PPP1R16BQ96T49 567 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 IMPG2Q9BZV3 1241 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 ANKFY1Q9P2R3 1169 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 ANP32DO95626 131 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 NQO1P15559 274 aaKnown RBP11.18□□□□□ -0.62
COL3A1-202ENST00000317840 ITGB5P18084 799 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 ZNF131P52739 623 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 DNAJC3Q13217 504 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 LACTB2Q53H82 288 aaPredicted RBP11.18□□□□□ -0.62
COL3A1-202ENST00000317840 TATDN1Q6P1N9 297 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 TMEM270Q6UE05 265 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 ZDHHC14Q8IZN3 488 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 C4orf33Q8N1A6 199 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 LRRC8CQ8TDW0 803 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 ART4Q93070 314 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 SMC6Q96SB8 1091 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 USP20Q9Y2K6 914 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 PIK3CDO00329 1044 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 PEX19P40855 299 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 PEX5P50542 639 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 COPS2P61201 443 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 DYNLT1P63172 113 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 P3H1Q32P28 736 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 SUPT20HL1Q3ZLR7 823 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 ACCSLQ4AC99 568 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 ACAD10Q6JQN1 1059 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 SV2AQ7L0J3 742 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 FAM71AQ8IYT1 594 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 AGBL3Q8NEM8 1001 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 SEMA4DQ92854 862 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 TAAR1Q96RJ0 339 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.18□□□□□ -0.62
COL3A1-202ENST00000317840 PNMA3Q9UL41 463 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 AGTPBP1Q9UPW5 1226 aa11.18□□□□□ -0.62
COL3A1-202ENST00000317840 H0Y3Z8 333 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 PEX10O60683 326 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 GSTA1P08263 222 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 MARK3P27448 753 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 ALDH5A1P51649 535 aaPredicted RBP11.17□□□□□ -0.62
COL3A1-202ENST00000317840 SPDYE2Q495Y8 402 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 MTERF2Q49AM1 385 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 ZNF394Q53GI3 561 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 DPH6Q7L8W6 267 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 SLC9A9Q8IVB4 645 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 EPB41L4BQ9H329 900 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 SEPT9Q9UHD8 586 aaPredicted RBP11.17□□□□□ -0.62
COL3A1-202ENST00000317840 TMX2Q9Y320 296 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 KLRG2A4D1S0 409 aaPredicted RBP11.17□□□□□ -0.62
COL3A1-202ENST00000317840 NOP56O00567 594 aaKnown RBP11.17□□□□□ -0.62
COL3A1-202ENST00000317840 TLR3O15455 904 aaKnown RBP11.17□□□□□ -0.62
COL3A1-202ENST00000317840 VIL1P09327 827 aaKnown RBP11.17□□□□□ -0.62
COL3A1-202ENST00000317840 CDC25CP30307 473 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 PCK1P35558 622 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 CCDC6Q16204 474 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 BBOF1Q8ND07 529 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 ERP27Q96DN0 273 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 TMEM8AQ9HCN3 771 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 WHRNQ9P202 907 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 NENFQ9UMX5 172 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 TRIM33Q9UPN9 1127 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 NAALADL1Q9UQQ1 740 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 SGK1O00141 431 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 RPS6P62753 249 aaKnown RBP11.17□□□□□ -0.62
COL3A1-202ENST00000317840 IGBP1P78318 339 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 IL31RAQ8NI17 732 aa11.17□□□□□ -0.62
COL3A1-202ENST00000317840 FIZ1Q96SL8 496 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms