RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 KRT12Q99456 494 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 SYT11Q9BT88 431 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 USP29Q9HBJ7 922 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 AS3MTQ9HBK9 375 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 FGFR1OP2Q9NVK5 253 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 FAF1Q9UNN5 650 aaPredicted RBP7.05□□□□□ -1.28
ZNF540-201ENST00000316433 TRAF3IP3Q9Y228 551 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 SNX9Q9Y5X1 595 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 MAPK13O15264 365 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 OPHN1O60890 802 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 IDH1O75874 414 aaKnown RBP7.05□□□□□ -1.28
ZNF540-201ENST00000316433 GGPS1O95749 300 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 PTPN2P17706 415 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 S100A5P33763 92 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 ACADSBP45954 432 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 NEK3P51956 506 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 TBC1D10BQ4KMP7 808 aaPredicted RBP7.05□□□□□ -1.28
ZNF540-201ENST00000316433 BOLA3Q53S33 107 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 TMTC4Q5T4D3 741 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 BTNL9Q6UXG8 535 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 EPM2AIP1Q7L775 607 aaPredicted RBP7.05□□□□□ -1.28
ZNF540-201ENST00000316433 TAOK1Q7L7X3 1001 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 PASD1Q8IV76 773 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 TRIM59Q8IWR1 403 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 ALDH16A1Q8IZ83 802 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 LRRC57Q8N9N7 239 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 NEDD1Q8NHV4 660 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 CERKQ8TCT0 537 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 GIPC3Q8TF64 312 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 TBC1D10AQ9BXI6 508 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 TLR10Q9BXR5 811 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 RTFDC1Q9BY42 306 aaPredicted RBP7.05□□□□□ -1.28
ZNF540-201ENST00000316433 ZNF304Q9HCX3 659 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 METTL5Q9NRN9 209 aaKnown RBP7.05□□□□□ -1.28
ZNF540-201ENST00000316433 ARHGAP20Q9P2F6 1191 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 PRKAG3Q9UGI9 489 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 TRMT112Q9UI30 125 aaKnown RBP7.05□□□□□ -1.28
ZNF540-201ENST00000316433 KIAA1257Q9ULG3 409 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 PPP1R9AQ9ULJ8 1098 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 SATB2Q9UPW6 733 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 IVNS1ABPQ9Y6Y0 642 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 UMODL1Q5DID0 1318 aa7.05□□□□□ -1.28
ZNF540-201ENST00000316433 FUOMA2VDF0 154 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 CAPN9O14815 690 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 VILLO15195 856 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 PLEKHA8P1O95397 391 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 PARNO95453 639 aaKnown RBP7.04□□□□□ -1.28
ZNF540-201ENST00000316433 PRKACBP22694 351 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 EPHB2P29323 1055 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 JAM2P57087 298 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 FKBP1AP62942 108 aaKnown RBP7.04□□□□□ -1.28
ZNF540-201ENST00000316433 COG7P83436 770 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 LPIN1Q14693 890 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 KCTD21Q4G0X4 260 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 KLHDC7AQ5VTJ3 777 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 SUSD4Q5VX71 490 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 RNF43Q68DV7 783 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 C1orf228Q6PIY5 440 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 FRMD5Q7Z6J6 570 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 ADGRA1Q86SQ6 560 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 ANKLE1Q8NAG6 615 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 ACMSDQ8TDX5 336 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 PRPF31Q8WWY3 499 aaKnown RBP7.04□□□□□ -1.28
ZNF540-201ENST00000316433 COX4I2Q96KJ9 171 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 NOX5Q96PH1 765 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 MRIQ9BWK5 157 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 GANQ9H2C0 597 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 KRT82Q9NSB4 513 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 FKBP14Q9NWM8 211 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 CNOT7Q9UIV1 285 aaKnown RBP7.04□□□□□ -1.28
ZNF540-201ENST00000316433 GTF3C4Q9UKN8 822 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 DOLKQ9UPQ8 538 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 ARIH1Q9Y4X5 557 aaPredicted RBP7.04□□□□□ -1.28
ZNF540-201ENST00000316433 ANKRD34BA5PLL1 514 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 HGSO14964 777 aaPredicted RBP7.04□□□□□ -1.28
ZNF540-201ENST00000316433 RAD51CO43502 376 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 TCEA3O75764 348 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 PHBP35232 272 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 EIF2B2P49770 351 aaKnown RBP7.04□□□□□ -1.28
ZNF540-201ENST00000316433 STX17P56962 302 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 SNRPFP62306 86 aaKnown RBP7.04□□□□□ -1.28
ZNF540-201ENST00000316433 POU5F1Q01860 360 aaKnown RBP7.04□□□□□ -1.28
ZNF540-201ENST00000316433 MAP3K10Q02779 954 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 COL19A1Q14993 1142 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 SPA17Q15506 151 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 SLC18A3Q16572 532 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 ASPRV1Q53RT3 343 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 ANO5Q75V66 913 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 LARGE2Q8N3Y3 721 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 KIAA0895Q8NCT3 520 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 VPS37AQ8NEZ2 397 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 GIPC2Q8TF65 315 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 MS4A14Q96JA4 679 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 ERP44Q9BS26 406 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 MKNK1Q9BUB5 465 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 RAB34Q9BZG1 259 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 NT5C3AQ9H0P0 336 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 DEFB129Q9H1M3 183 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 LRRC4CQ9HCJ2 640 aa7.04□□□□□ -1.28
ZNF540-201ENST00000316433 VTA1Q9NP79 307 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms