RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 TBCCQ15814 346 aa18.25■□□□□ 0.51
SYNPO-201ENST00000307662 CYGBQ8WWM9 190 aa18.25■□□□□ 0.51
SYNPO-201ENST00000307662 KDM4CQ9H3R0 1056 aa18.25■□□□□ 0.51
SYNPO-201ENST00000307662 NLRP11P59045 1033 aaKnown RBP18.24■□□□□ 0.51
SYNPO-201ENST00000307662 HAUS6Q7Z4H7 955 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 PODNQ7Z5L7 613 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 SLC30A5Q8TAD4 765 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 ERGIC2Q96RQ1 377 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 PCMTD2Q9NV79 361 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 SEPT3Q9UH03 358 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 RAP1GDS1P52306 607 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 QRICH1Q2TAL8 776 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 EDRF1Q3B7T1 1238 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 USP49Q70CQ1 688 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 DCPSQ96C86 337 aaKnown RBP18.24■□□□□ 0.51
SYNPO-201ENST00000307662 RMDN3Q96TC7 470 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 RBAKQ9NYW8 714 aaPredicted RBP18.24■□□□□ 0.51
SYNPO-201ENST00000307662 ZBTB24O43167 697 aaPredicted RBP18.24■□□□□ 0.51
SYNPO-201ENST00000307662 ERVK-24P63145 666 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 RCN1Q15293 331 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 FAM182BQ5T319 152 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 ARHGEF26Q96DR7 871 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 TUFT1Q9NNX1 390 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 TFR2Q9UP52 801 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 AIM2O14862 343 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 COMTP21964 271 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 HSPA13P48723 471 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 TMEM117Q9H0C3 514 aa18.24■□□□□ 0.51
SYNPO-201ENST00000307662 PABPC3Q9H361 631 aaKnown RBP18.24■□□□□ 0.51
SYNPO-201ENST00000307662 E7ENQ6 273 aa18.23■□□□□ 0.51
SYNPO-201ENST00000307662 PJA2O43164 708 aa18.23■□□□□ 0.51
SYNPO-201ENST00000307662 FDPSP14324 419 aaKnown RBP18.23■□□□□ 0.51
SYNPO-201ENST00000307662 S100A5P33763 92 aa18.23■□□□□ 0.51
SYNPO-201ENST00000307662 CENPCQ03188 943 aa18.23■□□□□ 0.51
SYNPO-201ENST00000307662 RBBP7Q16576 425 aa18.23■□□□□ 0.51
SYNPO-201ENST00000307662 RHBDL2Q9NX52 303 aa18.23■□□□□ 0.51
SYNPO-201ENST00000307662 IL1RAPL1Q9NZN1 696 aa18.23■□□□□ 0.51
SYNPO-201ENST00000307662 NDUFA13Q9P0J0 144 aa18.23■□□□□ 0.51
SYNPO-201ENST00000307662 XPO1O14980 1071 aaKnown RBP18.23■□□□□ 0.51
SYNPO-201ENST00000307662 SRP72O76094 671 aaKnown RBP18.23■□□□□ 0.51
SYNPO-201ENST00000307662 KRT75O95678 551 aa18.23■□□□□ 0.51
SYNPO-201ENST00000307662 HSPA1AP0DMV8 641 aaKnown RBP18.23■□□□□ 0.51
SYNPO-201ENST00000307662 HSPA1BP0DMV9 641 aaKnown RBP18.23■□□□□ 0.51
SYNPO-201ENST00000307662 KCNA2P16389 499 aa18.23■□□□□ 0.51
SYNPO-201ENST00000307662 SSTR3P32745 418 aaPredicted RBP18.23■□□□□ 0.51
SYNPO-201ENST00000307662 PSMC5P62195 406 aa18.23■□□□□ 0.51
SYNPO-201ENST00000307662 BTKQ06187 659 aa18.23■□□□□ 0.51
SYNPO-201ENST00000307662 CCDC85BQ15834 202 aaPredicted RBP18.23■□□□□ 0.51
SYNPO-201ENST00000307662 GPR101Q96P66 508 aaPredicted RBP18.23■□□□□ 0.51
SYNPO-201ENST00000307662 SESN2P58004 480 aaPredicted RBP18.23■□□□□ 0.51
SYNPO-201ENST00000307662 Q3C1V9 767 aa18.23■□□□□ 0.51
SYNPO-201ENST00000307662 PID1Q7Z2X4 250 aa18.23■□□□□ 0.51
SYNPO-201ENST00000307662 NOP9Q86U38 636 aaKnown RBP18.23■□□□□ 0.51
SYNPO-201ENST00000307662 POLR3FQ9H1D9 316 aaPredicted RBP18.23■□□□□ 0.51
SYNPO-201ENST00000307662 C20orf96Q9NUD7 363 aaPredicted RBP18.23■□□□□ 0.51
SYNPO-201ENST00000307662 MYMKA6NI61 221 aa18.23■□□□□ 0.51
SYNPO-201ENST00000307662 SMAPO00193 183 aa18.23■□□□□ 0.51
SYNPO-201ENST00000307662 COILP38432 576 aaPredicted RBP18.23■□□□□ 0.51
SYNPO-201ENST00000307662 MRPL28Q13084 256 aaKnown RBP18.23■□□□□ 0.51
SYNPO-201ENST00000307662 DNAJC3Q13217 504 aa18.23■□□□□ 0.51
SYNPO-201ENST00000307662 LBRQ14739 615 aaKnown RBP18.23■□□□□ 0.51
SYNPO-201ENST00000307662 ZCWPW2Q504Y3 356 aa18.23■□□□□ 0.51
SYNPO-201ENST00000307662 ATG9AQ7Z3C6 839 aa18.23■□□□□ 0.51
SYNPO-201ENST00000307662 CDR2LQ86X02 465 aaPredicted RBP18.23■□□□□ 0.51
SYNPO-201ENST00000307662 MRGBPQ9NV56 204 aa18.23■□□□□ 0.51
SYNPO-201ENST00000307662 TBC1D4O60343 1298 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 TMCC1O94876 653 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 SNRPAP09012 282 aaKnown RBP18.22■□□□□ 0.51
SYNPO-201ENST00000307662 WEE2P0C1S8 567 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 KIRREL3Q8IZU9 778 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 PGBD4Q96DM1 585 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 DNAJC7Q99615 494 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 GID8Q9NWU2 228 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 ALG6Q9Y672 507 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 ATP9BO43861 1147 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 PRLRP16471 622 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 EPHA7Q15375 998 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 TTC39BQ5VTQ0 682 aaPredicted RBP18.22■□□□□ 0.51
SYNPO-201ENST00000307662 C3orf62Q6ZUJ4 267 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 CPA5Q8WXQ8 436 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 E2F7Q96AV8 911 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 RUBCNLQ9H714 662 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 COL15A1P39059 1388 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 NBPF26B4DH59 902 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 E5RI56 91 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 CTDNEP1O95476 244 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 COPB2P35606 906 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 ARPP19P56211 112 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 SCARF1Q14162 830 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 RC3H1Q5TC82 1133 aaKnown RBP18.22■□□□□ 0.51
SYNPO-201ENST00000307662 MIGA2Q7L4E1 593 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 NBPF15Q8N660 670 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 AP5M1Q9H0R1 490 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 FEM1BQ9UK73 627 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 AGO2Q9UKV8 859 aaKnown RBP18.22■□□□□ 0.51
SYNPO-201ENST00000307662 APRTP07741 180 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 SLC9A1P19634 815 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 CATSPER4Q7RTX7 472 aa18.22■□□□□ 0.51
SYNPO-201ENST00000307662 SETD3Q86TU7 594 aaPredicted RBP18.22■□□□□ 0.51
SYNPO-201ENST00000307662 NDUFAF2Q8N183 169 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms