RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 DNALI1O14645 258 aaPredicted RBP6.75□□□□□ -1.33
VPS35-201ENST00000299138 GOLGA8HP0CJ92 632 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 YY1P25490 414 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 TMOD1P28289 359 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 GTF2H1P32780 548 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 ERFP50548 548 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 OTUD6AQ7L8S5 288 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 TAF8Q7Z7C8 310 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 CDR2LQ86X02 465 aaPredicted RBP6.75□□□□□ -1.33
VPS35-201ENST00000299138 TBCKQ8TEA7 893 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 TMEM174Q8WUU8 243 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 ZSWIM1Q9BR11 485 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 OSBPL10Q9BXB5 764 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 ADNPQ9H2P0 1102 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 STN1Q9H668 368 aaKnown RBP6.75□□□□□ -1.33
VPS35-201ENST00000299138 RIOX1Q9H6W3 641 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 GJB4Q9NTQ9 266 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 ZNF219Q9P2Y4 722 aaPredicted RBP6.75□□□□□ -1.33
VPS35-201ENST00000299138 ATP8A1Q9Y2Q0 1164 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 TRIM49BA6NDI0 452 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 FAM47DPA6NHR8 397 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 EFCAB14O75071 495 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 UNC5CO95185 931 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 CDC25AP30304 524 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 SLCO1A2P46721 670 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 BTKQ06187 659 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 NPY5RQ15761 445 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 FAM91A1Q658Y4 838 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.75□□□□□ -1.331e-6■■■■■ 116
VPS35-201ENST00000299138 TSEN2Q8NCE0 465 aaKnown RBP6.75□□□□□ -1.33
VPS35-201ENST00000299138 TBC1D16Q8TBP0 767 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 MTMR9Q96QG7 549 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 ELAC2Q9BQ52 826 aaKnown RBP6.75□□□□□ -1.33
VPS35-201ENST00000299138 MAGED2Q9UNF1 606 aaPredicted RBP6.75□□□□□ -1.33
VPS35-201ENST00000299138 TRIM17Q9Y577 477 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 FKBP6O75344 327 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 IL1BP01584 269 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 PLA2G4BP0C869 781 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 PYGBP11216 843 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 CHN1P15882 459 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 GRIK3Q13003 919 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 DNAJC3Q13217 504 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 MKRN4PQ13434 485 aaPredicted RBP6.75□□□□□ -1.33
VPS35-201ENST00000299138 ANO4Q32M45 955 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 USP33Q8TEY7 942 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 WDR60Q8WVS4 1066 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 CKAP2Q8WWK9 683 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 VCPIP1Q96JH7 1222 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 NACC1Q96RE7 527 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 LBHD1Q9BQE6 289 aaPredicted RBP6.75□□□□□ -1.33
VPS35-201ENST00000299138 PITPNM3Q9BZ71 974 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 FHDC1Q9C0D6 1143 aaPredicted RBP6.75□□□□□ -1.33
VPS35-201ENST00000299138 TMEM245Q9H330 911 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 ABCF3Q9NUQ8 709 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 INPP5FQ9Y2H2 1132 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 MTRF1O75570 445 aaKnown RBP6.75□□□□□ -1.33
VPS35-201ENST00000299138 TCF3P15923 654 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 ATP6V1C1P21283 382 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 TNNI2P48788 182 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 CYP1B1Q16678 543 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 ZC3H12AQ5D1E8 599 aaKnown RBP6.75□□□□□ -1.33
VPS35-201ENST00000299138 FOXR1Q6PIV2 292 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 MCF2L2Q86YR7 1114 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.75□□□□□ -1.33
VPS35-201ENST00000299138 ASAP1Q9ULH1 1129 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 LAMB4A4D0S4 1761 aa6.75□□□□□ -1.33
VPS35-201ENST00000299138 RTN2O75298 545 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 FTCDO95954 541 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 KRT16P08779 473 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 CYP19A1P11511 503 aaPredicted RBP6.74□□□□□ -1.33
VPS35-201ENST00000299138 RPA1P27694 616 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 AP3M2P53677 418 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 YARSP54577 528 aaKnown RBP6.74□□□□□ -1.33
VPS35-201ENST00000299138 DEFA1P59665 94 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 DEFA3P59666 94 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 GRIN1Q05586 938 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 ITKQ08881 620 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 CAPRIN1Q14444 709 aaKnown RBP6.74□□□□□ -1.33
VPS35-201ENST00000299138 MTFR1Q15390 333 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 NUGGCQ68CJ6 796 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 TRPC4APQ8TEL6 797 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 STK32AQ8WU08 396 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 DNAJC9Q8WXX5 260 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 RIN2Q8WYP3 895 aaPredicted RBP6.74□□□□□ -1.33
VPS35-201ENST00000299138 NSUN4Q96CB9 384 aaKnown RBP6.74□□□□□ -1.33
VPS35-201ENST00000299138 CFAP36Q96G28 342 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 NLRP4Q96MN2 994 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 LRRC19Q9H756 370 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 GMEB1Q9Y692 573 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 ZNF263O14978 683 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 GUCY1B2O75343 617 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 NR3C1P04150 777 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 INHBAP08476 426 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 MYBL2P10244 700 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 ARF4P18085 180 aaPredicted RBP6.74□□□□□ -1.33
VPS35-201ENST00000299138 PTPN4P29074 926 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 LONP2Q86WA8 852 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 GATAD2AQ86YP4 633 aa6.74□□□□□ -1.33
VPS35-201ENST00000299138 RTL3Q8N8U3 475 aaKnown RBP6.74□□□□□ -1.33
VPS35-201ENST00000299138 MIGA1Q8NAN2 632 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms