RNA–Protein interactions for RNA: ENST00000296215.7

SNIP1-201, Transcript of Smad nuclear interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNIP1, Length 4,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-201ENST00000296215 DEPDC1Q5TB30 811 aa12.34□□□□□ -0.43
SNIP1-201ENST00000296215 KLHDC10Q6PID8 442 aa12.34□□□□□ -0.43
SNIP1-201ENST00000296215 TSSK1BQ9BXA7 367 aa12.34□□□□□ -0.43
SNIP1-201ENST00000296215 CCSER1Q9C0I3 900 aa12.34□□□□□ -0.43
SNIP1-201ENST00000296215 MAP3K20Q9NYL2 800 aaKnown RBP12.34□□□□□ -0.43
SNIP1-201ENST00000296215 ZNF221Q9UK13 617 aa12.34□□□□□ -0.43
SNIP1-201ENST00000296215 ILVBLA1L0T0 632 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 GTPBP6O43824 516 aaPredicted RBP12.33□□□□□ -0.44
SNIP1-201ENST00000296215 NPR1P16066 1061 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 NPTX2P47972 431 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 FMR1Q06787 632 aaKnown RBP eCLIP12.33□□□□□ -0.44
SNIP1-201ENST00000296215 NCAPHQ15003 741 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 RNF43Q68DV7 783 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 DTHD1Q6ZMT9 781 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 UNC13DQ70J99 1090 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 PJA1Q8NG27 643 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 MAELQ96JY0 434 aaKnown RBP12.33□□□□□ -0.44
SNIP1-201ENST00000296215 TRIM51Q9BSJ1 452 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 STAP2Q9UGK3 403 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 TESPA1A2RU30 521 aaPredicted RBP12.33□□□□□ -0.44
SNIP1-201ENST00000296215 MYCP01106 439 aaPredicted RBP12.33□□□□□ -0.44
SNIP1-201ENST00000296215 TTKP33981 857 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 ATP6V1E1P36543 226 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 TUBP50607 506 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 GSTM4Q03013 218 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 RASA2Q15283 850 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 HP1BP3Q5SSJ5 553 aaPredicted RBP12.33□□□□□ -0.44
SNIP1-201ENST00000296215 SYCP2LQ5T4T6 812 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 TMPRSS6Q8IU80 811 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 MREGQ8N565 214 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 PHF21AQ96BD5 680 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 CHMP1AQ9HD42 196 aaPredicted RBP12.33□□□□□ -0.44
SNIP1-201ENST00000296215 POLE3Q9NRF9 147 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 ZNF224Q9NZL3 707 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 LIMA1Q9UHB6 759 aaKnown RBP12.33□□□□□ -0.44
SNIP1-201ENST00000296215 ADAMTS1Q9UHI8 967 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 KPNA1P52294 538 aaPredicted RBP12.33□□□□□ -0.44
SNIP1-201ENST00000296215 POU5F1Q01860 360 aaKnown RBP12.33□□□□□ -0.44
SNIP1-201ENST00000296215 SLC15A2Q16348 729 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 CENPSQ8N2Z9 138 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 TRPC4APQ8TEL6 797 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 ESR2Q92731 530 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 MAP4K1Q92918 833 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 PMEPA1Q969W9 287 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 CNNM2Q9H8M5 875 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 ERVK-11Q9UQG0 969 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 WDR47O94967 919 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 RPN1P04843 607 aaKnown RBP12.33□□□□□ -0.44
SNIP1-201ENST00000296215 ITIH1P19827 911 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 ETV3P41162 512 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 ARSHQ5FYA8 562 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 DCAF17Q5H9S7 520 aaPredicted RBP12.33□□□□□ -0.44
SNIP1-201ENST00000296215 PPM1LQ5SGD2 360 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 USP38Q8NB14 1042 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 EPS8L3Q8TE67 593 aaKnown RBP12.33□□□□□ -0.44
SNIP1-201ENST00000296215 TRABDQ9H4I3 376 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 VPS51Q9UID3 782 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 TUBE1Q9UJT0 475 aa12.33□□□□□ -0.44
SNIP1-201ENST00000296215 A0A1B0GW55 424 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 CCDC182A6NF36 153 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 M0QX08 132 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 TOM1L1O75674 476 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 ZNF806P0C7X5 589 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 DUX4L2P0CJ85 424 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 DUX4L3P0CJ86 424 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 DUX4L4P0CJ87 422 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 DUX4L5P0CJ88 424 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 DUX4L6P0CJ89 424 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 DUX4L7P0CJ90 424 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 DSTNP60981 165 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 FOLH1Q04609 750 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 BOLA3Q53S33 107 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 SCARA3Q6AZY7 606 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 ALG13Q9NP73 1137 aaKnown RBP12.32□□□□□ -0.44
SNIP1-201ENST00000296215 DUX4Q9UBX2 424 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 CARMIL3Q8ND23 1372 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 PNMA6EA0A0J9YXQ4 647 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 C5orf60A6NFR6 353 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 FOXN3O00409 490 aaPredicted RBP12.32□□□□□ -0.44
SNIP1-201ENST00000296215 MAPK10P53779 464 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 KHDC1Q4VXA5 237 aaKnown RBP12.32□□□□□ -0.44
SNIP1-201ENST00000296215 KIAA1755Q5JYT7 1200 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 RINT1Q6NUQ1 792 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 PRR23BQ6ZRT6 265 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 ERI1Q8IV48 349 aaKnown RBP12.32□□□□□ -0.44
SNIP1-201ENST00000296215 POC5Q8NA72 575 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 TTC13Q8NBP0 860 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 TMEM79Q9BSE2 394 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 REXO4Q9GZR2 422 aaKnown RBP12.32□□□□□ -0.44
SNIP1-201ENST00000296215 SENP1Q9P0U3 644 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 VPS54Q9P1Q0 977 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 SUGT1Q9Y2Z0 365 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 ESYT2A0FGR8 921 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 PEX11AO75192 247 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 IFNB1P01574 187 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 PRKCBP05771 671 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 VCLP18206 1134 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 MAN1A1P33908 653 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 SOX5P35711 763 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 NAMPTP43490 491 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms