RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 POU5F1BQ06416 359 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 LVRNQ6Q4G3 990 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 ZBED8Q8IZ13 594 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 TTC30BQ8N4P2 665 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 ZNF564Q8TBZ8 553 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-201ENST00000295550 CASP10Q92851 521 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 GRAMD1AQ96CP6 724 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 ZNF185O15231 689 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 FOXP2O15409 715 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 LAMB3Q13751 1172 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 SLFN12LQ6IEE8 588 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 CHP1Q99653 195 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 TRIM66O15016 1216 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 MEFVO15553 781 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-201ENST00000295550 TDP2O95551 362 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 PLOD1Q02809 727 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-201ENST00000295550 PIGOQ8TEQ8 1089 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 TEKT4Q8WW24 435 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 DCDC2Q9UHG0 476 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 XPO1O14980 1071 aaKnown RBP10.38□□□□□ -0.75
COL6A3-201ENST00000295550 MYO1DO94832 1006 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 GRK2P25098 689 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 PADI6Q6TGC4 694 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 ILDR1Q86SU0 546 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-201ENST00000295550 RPS6P62753 249 aaKnown RBP10.38□□□□□ -0.75
COL6A3-201ENST00000295550 DRAP1Q14919 205 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-201ENST00000295550 NAB2Q15742 525 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 MDH1BQ5I0G3 518 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 HOMEZQ8IX15 550 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 PPM1NQ8N819 430 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 AGR3Q8TD06 166 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 SNRNP27Q8WVK2 155 aaKnown RBP10.38□□□□□ -0.75
COL6A3-201ENST00000295550 CEP170P1Q96L14 293 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 PNKPQ96T60 521 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 DDX47Q9H0S4 455 aaKnown RBP10.38□□□□□ -0.75
COL6A3-201ENST00000295550 TRABDQ9H4I3 376 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 ZNF408Q9H9D4 720 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 FLT1P17948 1338 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 MYO1GB0I1T2 1018 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 SNAP23O00161 211 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 FGFR4P22455 802 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 ERFP50548 548 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 CDKAL1Q5VV42 579 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 RCSD1Q6JBY9 416 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 HEY1Q9Y5J3 304 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 NFIBO00712 420 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 MRPS35P82673 323 aaKnown RBP10.37□□□□□ -0.75
COL6A3-201ENST00000295550 CLK1P49759 484 aaKnown RBP10.37□□□□□ -0.75
COL6A3-201ENST00000295550 SPATA21Q7Z572 469 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 WWP1Q9H0M0 922 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 NLRP11P59045 1033 aaKnown RBP10.37□□□□□ -0.75
COL6A3-201ENST00000295550 CCNI2Q6ZMN8 369 aaPredicted RBP10.37□□□□□ -0.75
COL6A3-201ENST00000295550 BTN2A2Q8WVV5 523 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 CPVLQ9H3G5 476 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 F5H423 210 aaPredicted RBP10.37□□□□□ -0.75
COL6A3-201ENST00000295550 AKAP10O43572 662 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 KRT72Q14CN4 511 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 ZNF507Q8TCN5 953 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 MAGEB5Q9BZ81 275 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 TUFT1Q9NNX1 390 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 RBM12Q9NTZ6 932 aaKnown RBP10.37□□□□□ -0.75
COL6A3-201ENST00000295550 SELENONQ9NZV5 590 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 LRRC14Q15048 493 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 SURF1Q15526 300 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 C16orf89Q6UX73 402 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 RNPC3Q96LT9 517 aaKnown RBP10.37□□□□□ -0.75
COL6A3-201ENST00000295550 KDM4CQ9H3R0 1056 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 C4BPBP20851 252 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 KRR1Q13601 381 aaKnown RBP10.37□□□□□ -0.75
COL6A3-201ENST00000295550 PASD1Q8IV76 773 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 PDP2Q9P2J9 529 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 UBTFL6P0CB48 400 aaPredicted RBP10.37□□□□□ -0.75
COL6A3-201ENST00000295550 ROR1Q01973 937 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 PDXDC2PQ6P474 469 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 RNF135Q8IUD6 432 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 GALNT4Q8N4A0 578 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 GINS4Q9BRT9 223 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 TMEM191CA6NGB0 347 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 FXR2P51116 673 aaKnown RBP eCLIP10.37□□□□□ -0.75
COL6A3-201ENST00000295550 KIAA1755Q5JYT7 1200 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 C16orf86Q6ZW13 317 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 BBS2Q9BXC9 721 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 KLHL25Q9H0H3 589 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 ZNF556Q9HAH1 456 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 AGPAT5Q9NUQ2 364 aa10.37□□□□□ -0.75
COL6A3-201ENST00000295550 ATRNO75882 1429 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 INO80B-WBP1J3KQ70 363 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 TOMM70O94826 608 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 KRT17Q04695 432 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 KHDRBS2Q5VWX1 349 aaKnown RBP10.36□□□□□ -0.75
COL6A3-201ENST00000295550 NOA1Q8NC60 698 aaKnown RBP10.36□□□□□ -0.75
COL6A3-201ENST00000295550 ARHGEF1Q92888 912 aaKnown RBP10.36□□□□□ -0.75
COL6A3-201ENST00000295550 TMA16Q96EY4 203 aaKnown RBP10.36□□□□□ -0.75
COL6A3-201ENST00000295550 GPR101Q96P66 508 aaPredicted RBP10.36□□□□□ -0.75
COL6A3-201ENST00000295550 FUT8Q9BYC5 575 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 INO80BQ9C086 356 aaPredicted RBP10.36□□□□□ -0.75
COL6A3-201ENST00000295550 SARS2Q9NP81 518 aaKnown RBP10.36□□□□□ -0.75
COL6A3-201ENST00000295550 TRIM10Q9UDY6 481 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 FEM1BQ9UK73 627 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 NCAPHQ15003 741 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms