RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 ERAP1Q9NZ08 941 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 NCANO14594 1321 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 HSF2BPO75031 334 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 SYF2O95926 243 aaKnown RBP12.28□□□□□ -0.44
CUX1-202ENST00000292538 MYCNP04198 464 aaPredicted RBP12.28□□□□□ -0.44
CUX1-202ENST00000292538 LGALS2P05162 132 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 CD19P15391 556 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 KCNJ1P48048 391 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 EFNA5P52803 228 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 ITIH3Q06033 890 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 MMS22LQ6ZRQ5 1243 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 CCDC50Q8IVM0 306 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 AFAP1L1Q8TED9 768 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 DDX1Q92499 740 aaKnown RBP12.28□□□□□ -0.44
CUX1-202ENST00000292538 L3MBTL3Q96JM7 780 aaPredicted RBP12.28□□□□□ -0.44
CUX1-202ENST00000292538 HEMGNQ9BXL5 484 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 KLHL11Q9NVR0 708 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 PCDHB2Q9Y5E7 798 aa12.28□□□□□ -0.44
CUX1-202ENST00000292538 GOLGA6L10A0A0M3HER8 536 aa12.27□□□□□ -0.44
CUX1-202ENST00000292538 CETPP11597 493 aa12.27□□□□□ -0.44
CUX1-202ENST00000292538 CDH8P55286 799 aa12.27□□□□□ -0.44
CUX1-202ENST00000292538 GCNT1Q02742 428 aa12.27□□□□□ -0.44
CUX1-202ENST00000292538 LDLRAD1Q5T700 205 aa12.27□□□□□ -0.44
CUX1-202ENST00000292538 KCNV1Q6PIU1 500 aa12.27□□□□□ -0.44
CUX1-202ENST00000292538 PNMA8AQ86V59 439 aaPredicted RBP12.27□□□□□ -0.44
CUX1-202ENST00000292538 OR2W6PQ8NHA6 318 aa12.27□□□□□ -0.44
CUX1-202ENST00000292538 MAGOHBQ96A72 148 aaKnown RBP12.27□□□□□ -0.44
CUX1-202ENST00000292538 CGRRF1Q99675 332 aa12.27□□□□□ -0.44
CUX1-202ENST00000292538 ADAM22Q9P0K1 906 aa12.27□□□□□ -0.44
CUX1-202ENST00000292538 BCCIPQ9P287 314 aaKnown RBP eCLIP12.27□□□□□ -0.44
CUX1-202ENST00000292538 UTP11Q9Y3A2 253 aaKnown RBP12.27□□□□□ -0.44
CUX1-202ENST00000292538 MYH9P35579 1960 aaKnown RBP12.27□□□□□ -0.44
CUX1-202ENST00000292538 HBP1O60381 514 aa12.27□□□□□ -0.45
CUX1-202ENST00000292538 DUOXA2Q1HG44 320 aa12.27□□□□□ -0.45
CUX1-202ENST00000292538 CLEC16AQ2KHT3 1053 aa12.27□□□□□ -0.45
CUX1-202ENST00000292538 GLE1Q53GS7 698 aaKnown RBP12.27□□□□□ -0.45
CUX1-202ENST00000292538 SEL1L2Q5TEA6 688 aa12.27□□□□□ -0.45
CUX1-202ENST00000292538 CCDC26Q8TAB7 109 aa12.27□□□□□ -0.45
CUX1-202ENST00000292538 UBLCP1Q8WVY7 318 aaPredicted RBP12.27□□□□□ -0.45
CUX1-202ENST00000292538 VTI1AQ96AJ9 217 aa12.27□□□□□ -0.45
CUX1-202ENST00000292538 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.27□□□□□ -0.45
CUX1-202ENST00000292538 CNTNAP2Q9UHC6 1331 aa12.27□□□□□ -0.45
CUX1-202ENST00000292538 MYO1FO00160 1098 aa12.27□□□□□ -0.45
CUX1-202ENST00000292538 OGTO15294 1046 aa12.27□□□□□ -0.45
CUX1-202ENST00000292538 CLTAP09496 248 aa12.27□□□□□ -0.45
CUX1-202ENST00000292538 GZMAP12544 262 aa12.27□□□□□ -0.45
CUX1-202ENST00000292538 FLT3P36888 993 aa12.27□□□□□ -0.45
CUX1-202ENST00000292538 TFDP1Q14186 410 aa12.27□□□□□ -0.45
CUX1-202ENST00000292538 WDR72Q3MJ13 1102 aa12.27□□□□□ -0.45
CUX1-202ENST00000292538 CFAP58Q5T655 872 aa12.27□□□□□ -0.45
CUX1-202ENST00000292538 TMEM134Q9H6X4 195 aa12.27□□□□□ -0.45
CUX1-202ENST00000292538 GBA2Q9HCG7 927 aaPredicted RBP12.27□□□□□ -0.45
CUX1-202ENST00000292538 POLIQ9UNA4 740 aa12.27□□□□□ -0.45
CUX1-202ENST00000292538 SNX24Q9Y343 169 aa12.27□□□□□ -0.45
CUX1-202ENST00000292538 AGPSO00116 658 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 DYNC1LI2O43237 492 aaPredicted RBP12.26□□□□□ -0.45
CUX1-202ENST00000292538 GRIN3BO60391 1043 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 CAPN2P17655 700 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 DR1Q01658 176 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 TRIP13Q15645 432 aaPredicted RBP12.26□□□□□ -0.45
CUX1-202ENST00000292538 KIZQ2M2Z5 673 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 ZNF699Q32M78 642 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 C15orf39Q6ZRI6 1047 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 PLPPR4Q7Z2D5 763 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 CCDC105Q8IYK2 499 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 UHMK1Q8TAS1 419 aaKnown RBP12.26□□□□□ -0.45
CUX1-202ENST00000292538 C1orf54Q8WWF1 131 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 ZSWIM1Q9BR11 485 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 NEUROG2Q9H2A3 272 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 RPF1Q9H9Y2 349 aaKnown RBP12.26□□□□□ -0.45
CUX1-202ENST00000292538 SETD4Q9NVD3 440 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 STYXL1Q9Y6J8 313 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 H3BRB1 525 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 O00370 1275 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 PIK3R2O00459 728 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 GH1P01241 217 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 VPS41P49754 854 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 GTF2A2P52657 109 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 ARHGAP1Q07960 439 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 GPR142Q7Z601 462 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 MCOLN2Q8IZK6 566 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 SH2D3CQ8N5H7 860 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 C2orf69Q8N8R5 385 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 FAM71BQ8TC56 605 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 TMEM174Q8WUU8 243 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 MS4A4AQ96JQ5 239 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 UBXN6Q9BZV1 441 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 TUT1Q9H6E5 874 aaKnown RBP12.26□□□□□ -0.45
CUX1-202ENST00000292538 GDF3Q9NR23 364 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 GTF3C4Q9UKN8 822 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 ADGRA2Q96PE1 1338 aa12.26□□□□□ -0.45
CUX1-202ENST00000292538 GOLGA6CA6NDK9 693 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 GPR25O00155 361 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 PMM2O15305 246 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 GOLGA6DP0CG33 693 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 ABCD1P33897 745 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 PLTPP55058 493 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 LAMC2Q13753 1193 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 KAZNQ674X7 775 aa12.25□□□□□ -0.45
CUX1-202ENST00000292538 TAPT1Q6NXT6 567 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms