RNA–Protein interactions for RNA: ENST00000263073.10

SMG6-201, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMG6, Length 5,960 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-201ENST00000263073 PHF20Q9BVI0 1012 aa12.68□□□□□ -0.38
SMG6-201ENST00000263073 GCOM2Q9BZD3 368 aaPredicted RBP12.68□□□□□ -0.38
SMG6-201ENST00000263073 MANSC1Q9H8J5 431 aa12.68□□□□□ -0.38
SMG6-201ENST00000263073 SP110Q9HB58 689 aa12.68□□□□□ -0.38
SMG6-201ENST00000263073 POLRMTO00411 1230 aaKnown RBP12.68□□□□□ -0.38
SMG6-201ENST00000263073 ASAP2O43150 1006 aa12.68□□□□□ -0.38
SMG6-201ENST00000263073 FDPSP14324 419 aaKnown RBP12.68□□□□□ -0.38
SMG6-201ENST00000263073 ZNF200P98182 395 aaPredicted RBP12.68□□□□□ -0.38
SMG6-201ENST00000263073 PCSK7Q16549 785 aa12.68□□□□□ -0.38
SMG6-201ENST00000263073 SPDYAQ5MJ70 313 aa12.68□□□□□ -0.38
SMG6-201ENST00000263073 AGBL2Q5U5Z8 902 aa12.68□□□□□ -0.38
SMG6-201ENST00000263073 CDKL3Q8IVW4 592 aaPredicted RBP12.68□□□□□ -0.38
SMG6-201ENST00000263073 TEX9Q8N6V9 391 aa12.68□□□□□ -0.38
SMG6-201ENST00000263073 PACSIN1Q9BY11 444 aa12.68□□□□□ -0.38
SMG6-201ENST00000263073 MRPL40Q9NQ50 206 aaKnown RBP12.68□□□□□ -0.38
SMG6-201ENST00000263073 CHCHD3Q9NX63 227 aaKnown RBP12.68□□□□□ -0.38
SMG6-201ENST00000263073 BFARQ9NZS9 450 aa12.68□□□□□ -0.38
SMG6-201ENST00000263073 HUS1O60921 280 aa12.68□□□□□ -0.38
SMG6-201ENST00000263073 WDR47O94967 919 aa12.68□□□□□ -0.38
SMG6-201ENST00000263073 TMED10P49755 219 aaKnown RBP12.68□□□□□ -0.38
SMG6-201ENST00000263073 CYP4A22Q5TCH4 519 aa12.68□□□□□ -0.38
SMG6-201ENST00000263073 GIMAP4Q9NUV9 329 aa12.68□□□□□ -0.38
SMG6-201ENST00000263073 CD44P16070 742 aaKnown RBP12.68□□□□□ -0.38
SMG6-201ENST00000263073 AVPR1AP37288 418 aa12.68□□□□□ -0.38
SMG6-201ENST00000263073 SCTRP47872 440 aa12.68□□□□□ -0.38
SMG6-201ENST00000263073 TBCCQ15814 346 aa12.68□□□□□ -0.38
SMG6-201ENST00000263073 KCTD19Q17RG1 926 aaPredicted RBP12.68□□□□□ -0.38
SMG6-201ENST00000263073 FUT11Q495W5 492 aa12.68□□□□□ -0.38
SMG6-201ENST00000263073 TJAP1Q5JTD0 557 aa12.68□□□□□ -0.38
SMG6-201ENST00000263073 FAM160B2Q86V87 743 aa12.68□□□□□ -0.38
SMG6-201ENST00000263073 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.68□□□□□ -0.38
SMG6-201ENST00000263073 ATP8B3O60423 1300 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 P4HBP07237 508 aaKnown RBP12.67□□□□□ -0.38
SMG6-201ENST00000263073 SULT1E1P49888 294 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 ACTR2P61160 394 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 TWF2Q6IBS0 349 aaKnown RBP12.67□□□□□ -0.38
SMG6-201ENST00000263073 HEATR4Q86WZ0 1026 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 TMEM143Q96AN5 459 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 NMD3Q96D46 503 aaKnown RBP12.67□□□□□ -0.38
SMG6-201ENST00000263073 VPS50Q96JG6 964 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 ASPSCR1Q9BZE9 553 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 LMCD1Q9NZU5 365 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 ERBB3P21860 1342 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 TMEM247A6NEH6 219 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 NME5P56597 212 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 NAB2Q15742 525 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 EFHC2Q5JST6 749 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 RMDN1Q96DB5 314 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 PRPF4O43172 522 aaKnown RBP eCLIP12.67□□□□□ -0.384e-9■■□□□ 12.1
SMG6-201ENST00000263073 CDH16O75309 829 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 TFRCP02786 760 aaKnown RBP12.67□□□□□ -0.38
SMG6-201ENST00000263073 FMO5P49326 533 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 PDAP1Q13442 181 aaKnown RBP12.67□□□□□ -0.38
SMG6-201ENST00000263073 KCNB1Q14721 858 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 ZNF555Q8NEP9 628 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 ISCUQ9H1K1 167 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 PAIP2BQ9ULR5 123 aaKnown RBP12.67□□□□□ -0.38
SMG6-201ENST00000263073 ATP7BP35670 1465 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 ITIH6Q6UXX5 1313 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 CYP27B1O15528 508 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 APOA1P02647 267 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 TBXAS1P24557 533 aaPredicted RBP12.67□□□□□ -0.38
SMG6-201ENST00000263073 ATP6V1E1P36543 226 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 USP10Q14694 798 aaKnown RBP12.67□□□□□ -0.38
SMG6-201ENST00000263073 RIN3Q8TB24 985 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 MYCBPAPQ8TBZ2 947 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 SGF29Q96ES7 293 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 MRPL1Q9BYD6 325 aaKnown RBP12.67□□□□□ -0.38
SMG6-201ENST00000263073 SEL1LQ9UBV2 794 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 SMG5Q9UPR3 1016 aaKnown RBP12.67□□□□□ -0.38
SMG6-201ENST00000263073 BCORL1Q5H9F3 1711 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 CDC42BPAQ5VT25 1732 aa12.67□□□□□ -0.38
SMG6-201ENST00000263073 PPP1R3GB7ZBB8 358 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 KRT8P05787 483 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 YWHABP31946 246 aaKnown RBP12.66□□□□□ -0.38
SMG6-201ENST00000263073 SERPINB5P36952 375 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 FAM71DQ8N9W8 422 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 PPHLN1Q8NEY8 458 aaKnown RBP12.66□□□□□ -0.38
SMG6-201ENST00000263073 IGDCC4Q8TDY8 1250 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 LZICQ8WZA0 190 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 FAM111AQ96PZ2 611 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 ITIH2P19823 946 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 ACCSLQ4AC99 568 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 NSL1Q96IY1 281 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 TBC1D23Q9NUY8 699 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 PHTF1Q9UMS5 762 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 CPSF1Q10570 1443 aaKnown RBP12.66□□□□□ -0.38
SMG6-201ENST00000263073 CDK12Q9NYV4 1490 aaPredicted RBP12.66□□□□□ -0.38
SMG6-201ENST00000263073 F5H6K3 240 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 C21orf2O43822 256 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 NQO1P15559 274 aaKnown RBP12.66□□□□□ -0.38
SMG6-201ENST00000263073 ANTXR2P58335 489 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 KLRC3Q07444 240 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 LRRC74AQ0VAA2 488 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 MRPL28Q13084 256 aaKnown RBP12.66□□□□□ -0.38
SMG6-201ENST00000263073 INPP5AQ14642 412 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 WDR72Q3MJ13 1102 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 DEPDC1Q5TB30 811 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 RCSD1Q6JBY9 416 aa12.66□□□□□ -0.38
SMG6-201ENST00000263073 SLC25A41Q8N5S1 370 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms