RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 CYB5D1Q6P9G0 228 aa22.71■■□□□ 1.23
TRIM28-201ENST00000253024 OR5B17Q8NGF7 314 aa22.71■■□□□ 1.23
TRIM28-201ENST00000253024 KIF9Q9HAQ2 790 aa22.71■■□□□ 1.23
TRIM28-201ENST00000253024 ATF2P15336 505 aa22.71■■□□□ 1.23
TRIM28-201ENST00000253024 MARK3P27448 753 aa22.71■■□□□ 1.23
TRIM28-201ENST00000253024 PLCB3Q01970 1234 aa22.71■■□□□ 1.23
TRIM28-201ENST00000253024 C6orf118Q5T5N4 469 aa22.71■■□□□ 1.23
TRIM28-201ENST00000253024 PPP1R16BQ96T49 567 aa22.71■■□□□ 1.23
TRIM28-201ENST00000253024 ADAM22Q9P0K1 906 aa22.71■■□□□ 1.23
TRIM28-201ENST00000253024 BRWD3Q6RI45 1802 aa22.7■■□□□ 1.23
TRIM28-201ENST00000253024 RGS20O76081 388 aa22.7■■□□□ 1.22
TRIM28-201ENST00000253024 MAPTP10636 758 aaKnown RBP22.7■■□□□ 1.22
TRIM28-201ENST00000253024 RARGP13631 454 aa22.7■■□□□ 1.22
TRIM28-201ENST00000253024 POLGP54098 1239 aaPredicted RBP22.7■■□□□ 1.22
TRIM28-201ENST00000253024 TMED2Q15363 201 aa22.7■■□□□ 1.22
TRIM28-201ENST00000253024 BRDTQ58F21 947 aaPredicted RBP22.7■■□□□ 1.22
TRIM28-201ENST00000253024 HAPLN2Q9GZV7 340 aa22.7■■□□□ 1.22
TRIM28-201ENST00000253024 APOBEC3GQ9HC16 384 aaKnown RBP22.7■■□□□ 1.22
TRIM28-201ENST00000253024 STK38LQ9Y2H1 464 aa22.7■■□□□ 1.22
TRIM28-201ENST00000253024 ZBED4O75132 1171 aa22.7■■□□□ 1.22
TRIM28-201ENST00000253024 RFX1P22670 979 aa22.7■■□□□ 1.22
TRIM28-201ENST00000253024 WDR44Q5JSH3 913 aa22.7■■□□□ 1.22
TRIM28-201ENST00000253024 TXNRD3NBQ6F5E7 133 aa22.7■■□□□ 1.22
TRIM28-201ENST00000253024 DPH6Q7L8W6 267 aa22.7■■□□□ 1.22
TRIM28-201ENST00000253024 FUKQ8N0W3 1084 aa22.7■■□□□ 1.22
TRIM28-201ENST00000253024 FHDC1Q9C0D6 1143 aaPredicted RBP22.7■■□□□ 1.22
TRIM28-201ENST00000253024 ZNF541Q9H0D2 1346 aa22.69■■□□□ 1.22
TRIM28-201ENST00000253024 DRP2Q13474 957 aa22.69■■□□□ 1.22
TRIM28-201ENST00000253024 FASTKD3Q14CZ7 662 aaKnown RBP22.69■■□□□ 1.22
TRIM28-201ENST00000253024 CNGA2Q16280 664 aa22.69■■□□□ 1.22
TRIM28-201ENST00000253024 ZNF365Q70YC5 407 aa22.69■■□□□ 1.22
TRIM28-201ENST00000253024 C1orf131Q8NDD1 294 aaKnown RBP22.69■■□□□ 1.22
TRIM28-201ENST00000253024 SUPT20HQ8NEM7 779 aa22.69■■□□□ 1.22
TRIM28-201ENST00000253024 SPOCK2Q92563 424 aa22.69■■□□□ 1.22
TRIM28-201ENST00000253024 EDN1P05305 212 aa22.69■■□□□ 1.22
TRIM28-201ENST00000253024 RPSAP08865 295 aaKnown RBP22.69■■□□□ 1.22
TRIM28-201ENST00000253024 BRAFP15056 766 aa22.69■■□□□ 1.22
TRIM28-201ENST00000253024 GPC3P51654 580 aa22.69■■□□□ 1.22
TRIM28-201ENST00000253024 SP2Q02086 613 aa22.69■■□□□ 1.22
TRIM28-201ENST00000253024 CCT6BQ92526 530 aa22.69■■□□□ 1.22
TRIM28-201ENST00000253024 CNOT10Q9H9A5 744 aaKnown RBP22.69■■□□□ 1.22
TRIM28-201ENST00000253024 FBXO40Q9UH90 709 aa22.69■■□□□ 1.22
TRIM28-201ENST00000253024 PNMA3Q9UL41 463 aa22.69■■□□□ 1.22
TRIM28-201ENST00000253024 AGAP1Q9UPQ3 857 aa22.69■■□□□ 1.22
TRIM28-201ENST00000253024 VWA5AO00534 786 aa22.68■■□□□ 1.22
TRIM28-201ENST00000253024 PLSCR1O15162 318 aa22.68■■□□□ 1.22
TRIM28-201ENST00000253024 SMTNL2Q2TAL5 461 aa22.68■■□□□ 1.22
TRIM28-201ENST00000253024 CYP4A22Q5TCH4 519 aa22.68■■□□□ 1.22
TRIM28-201ENST00000253024 FLAD1Q8NFF5 587 aa22.68■■□□□ 1.22
TRIM28-201ENST00000253024 WDR46O15213 610 aaKnown RBP22.68■■□□□ 1.22
TRIM28-201ENST00000253024 TLR3O15455 904 aaKnown RBP22.68■■□□□ 1.22
TRIM28-201ENST00000253024 GNA15P30679 374 aa22.68■■□□□ 1.22
TRIM28-201ENST00000253024 CNTN2Q02246 1040 aa22.68■■□□□ 1.22
TRIM28-201ENST00000253024 PPP2R5EQ16537 467 aa22.68■■□□□ 1.22
TRIM28-201ENST00000253024 SPATS2Q86XZ4 545 aaKnown RBP22.68■■□□□ 1.22
TRIM28-201ENST00000253024 PGM2Q96G03 612 aa22.68■■□□□ 1.22
TRIM28-201ENST00000253024 CCT8L1PA6NM43 557 aa22.68■■□□□ 1.22
TRIM28-201ENST00000253024 TNFSF9P41273 254 aa22.68■■□□□ 1.22
TRIM28-201ENST00000253024 NRLP54845 237 aa22.68■■□□□ 1.22
TRIM28-201ENST00000253024 ACTR2P61160 394 aa22.68■■□□□ 1.22
TRIM28-201ENST00000253024 P3H1Q32P28 736 aa22.68■■□□□ 1.22
TRIM28-201ENST00000253024 TPX2Q9ULW0 747 aaKnown RBP22.68■■□□□ 1.22
TRIM28-201ENST00000253024 MYPNQ86TC9 1320 aa22.67■■□□□ 1.22
TRIM28-201ENST00000253024 KIF13BQ9NQT8 1826 aa22.67■■□□□ 1.22
TRIM28-201ENST00000253024 PIK3R2O00459 728 aa22.67■■□□□ 1.22
TRIM28-201ENST00000253024 P4HA2O15460 535 aa22.67■■□□□ 1.22
TRIM28-201ENST00000253024 UBOX5O94941 541 aa22.67■■□□□ 1.22
TRIM28-201ENST00000253024 IZUMO3Q5VZ72 239 aa22.67■■□□□ 1.22
TRIM28-201ENST00000253024 ANKS4BQ8N8V4 417 aa22.67■■□□□ 1.22
TRIM28-201ENST00000253024 IFT74Q96LB3 600 aa22.67■■□□□ 1.22
TRIM28-201ENST00000253024 AGO2Q9UKV8 859 aaKnown RBP22.67■■□□□ 1.22
TRIM28-201ENST00000253024 ZNRF3Q9ULT6 936 aa22.67■■□□□ 1.22
TRIM28-201ENST00000253024 CSDE1O75534 798 aaKnown RBP22.67■■□□□ 1.22
TRIM28-201ENST00000253024 RDXP35241 583 aaKnown RBP22.67■■□□□ 1.22
TRIM28-201ENST00000253024 KRT76Q01546 638 aa22.67■■□□□ 1.22
TRIM28-201ENST00000253024 SLMAPQ14BN4 828 aa22.67■■□□□ 1.22
TRIM28-201ENST00000253024 ASAP3Q8TDY4 903 aa22.67■■□□□ 1.22
TRIM28-201ENST00000253024 LBHD1Q9BQE6 289 aaPredicted RBP22.67■■□□□ 1.22
TRIM28-201ENST00000253024 DCLK3Q9C098 648 aa22.67■■□□□ 1.22
TRIM28-201ENST00000253024 JPH1Q9HDC5 661 aaPredicted RBP22.67■■□□□ 1.22
TRIM28-201ENST00000253024 RBAKQ9NYW8 714 aaPredicted RBP22.67■■□□□ 1.22
TRIM28-201ENST00000253024 UVRAGQ9P2Y5 699 aa22.67■■□□□ 1.22
TRIM28-201ENST00000253024 ZNF148Q9UQR1 794 aa22.67■■□□□ 1.22
TRIM28-201ENST00000253024 NUB1Q9Y5A7 615 aa22.67■■□□□ 1.22
TRIM28-201ENST00000253024 DOCK5Q9H7D0 1870 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 EIF4E1BA6NMX2 242 aaKnown RBP22.66■■□□□ 1.22
TRIM28-201ENST00000253024 A8MUI8 341 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 AGTP01019 485 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 WEE2P0C1S8 567 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 MUTP22033 750 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 HIRAP54198 1017 aaPredicted RBP22.66■■□□□ 1.22
TRIM28-201ENST00000253024 KCNJ2P63252 427 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 KCNT1Q5JUK3 1230 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 FAM228AQ86W67 206 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 FMNL3Q8IVF7 1028 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 C4orf33Q8N1A6 199 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 PRCCQ92733 491 aaPredicted RBP22.66■■□□□ 1.22
TRIM28-201ENST00000253024 WRNIP1Q96S55 665 aa22.66■■□□□ 1.22
TRIM28-201ENST00000253024 C12orf65Q9H3J6 166 aaKnown RBP22.66■■□□□ 1.22
TRIM28-201ENST00000253024 CYP26B1Q9NR63 512 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms