RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 PPP4R1Q8TF05 950 aa13.77□□□□□ -0.2
MSH2-201ENST00000233146 OSBPL6Q9BZF3 934 aa13.77□□□□□ -0.2
MSH2-201ENST00000233146 GANQ9H2C0 597 aa13.77□□□□□ -0.2
MSH2-201ENST00000233146 C17orf75Q9HAS0 396 aa13.77□□□□□ -0.2
MSH2-201ENST00000233146 ZMYM2Q9UBW7 1377 aa13.77□□□□□ -0.2
MSH2-201ENST00000233146 TTLL13PA6NNM8 815 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 H3BSA7 217 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 TP73O15350 636 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 PRPF4O43172 522 aaKnown RBP eCLIP13.77□□□□□ -0.219e-10■■■□□ 17.2
MSH2-201ENST00000233146 ENDOUP21128 410 aaKnown RBP13.77□□□□□ -0.21
MSH2-201ENST00000233146 CTNNA2P26232 953 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 FOXO4P98177 505 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 PPP2R5BQ15173 497 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 ARL13BQ3SXY8 428 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 C6orf163Q5TEZ5 329 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 FAAH2Q6GMR7 532 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 POTEHQ6S545 545 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 DCDC5Q6ZRR9 648 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.77□□□□□ -0.21
MSH2-201ENST00000233146 DDX12PQ92771 950 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 SKA1Q96BD8 255 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 ARHGEF4Q9NR80 690 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 NEU2Q9Y3R4 380 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 V9GY48 417 aaPredicted RBP13.77□□□□□ -0.21
MSH2-201ENST00000233146 ATAD5Q96QE3 1844 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 EYA2O00167 538 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 KDM1AO60341 852 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 CIB2O75838 187 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 IDH1O75874 414 aaKnown RBP13.77□□□□□ -0.21
MSH2-201ENST00000233146 FUCA1P04066 466 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 HSPA8P11142 646 aaKnown RBP13.77□□□□□ -0.21
MSH2-201ENST00000233146 ZNF211Q13398 564 aaPredicted RBP13.77□□□□□ -0.21
MSH2-201ENST00000233146 FAM209AQ5JX71 171 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 DTHD1Q6ZMT9 781 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 RNF111Q6ZNA4 994 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 WDR75Q8IWA0 830 aaKnown RBP13.77□□□□□ -0.21
MSH2-201ENST00000233146 RFWD2Q8NHY2 731 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 CCDC110Q8TBZ0 833 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 XAGE3Q8WTP9 111 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 MAML1Q92585 1016 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 PRR11Q96HE9 360 aaPredicted RBP13.77□□□□□ -0.21
MSH2-201ENST00000233146 OSBPL8Q9BZF1 889 aa13.77□□□□□ -0.21
MSH2-201ENST00000233146 DNAJC17Q9NVM6 304 aaKnown RBP13.77□□□□□ -0.21
MSH2-201ENST00000233146 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.77□□□□□ -0.21
MSH2-201ENST00000233146 HEMK1Q9Y5R4 338 aaPredicted RBP13.77□□□□□ -0.21
MSH2-201ENST00000233146 IQCA1LA6NCM1 817 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 FAM47E-STBD1D6RA91 191 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 TFPTP0C1Z6 253 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 FGFR1P11362 822 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 MYCLP1P12525 358 aaPredicted RBP13.76□□□□□ -0.21
MSH2-201ENST00000233146 HSPA6P17066 643 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 PSMC1P62191 440 aaKnown RBP13.76□□□□□ -0.21
MSH2-201ENST00000233146 NOP14P78316 857 aaKnown RBP13.76□□□□□ -0.21
MSH2-201ENST00000233146 FOLH1Q04609 750 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 LRRC36Q1X8D7 754 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 ANKDD1AQ495B1 522 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 IL23RQ5VWK5 629 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 LPCAT4Q643R3 524 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 MRPL1Q9BYD6 325 aaKnown RBP13.76□□□□□ -0.21
MSH2-201ENST00000233146 S100A14Q9HCY8 104 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 RRN3Q9NYV6 651 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 ANKFY1Q9P2R3 1169 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 AFDNP55196 1824 aaKnown RBP13.76□□□□□ -0.21
MSH2-201ENST00000233146 MYH11P35749 1972 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 ATMINO43313 823 aaPredicted RBP13.76□□□□□ -0.21
MSH2-201ENST00000233146 TM7SF2O76062 418 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 PCCAP05165 728 aaPredicted RBP13.76□□□□□ -0.21
MSH2-201ENST00000233146 CSF1RP07333 972 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 ZNF12P17014 697 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 ADORA1P30542 326 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 PPARGP37231 505 aaPredicted RBP13.76□□□□□ -0.21
MSH2-201ENST00000233146 EIF2B2P49770 351 aaKnown RBP13.76□□□□□ -0.21
MSH2-201ENST00000233146 ERFP50548 548 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 PPATQ06203 517 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 NCOA4Q13772 614 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 NONOQ15233 471 aaKnown RBP eCLIP13.76□□□□□ -0.21
MSH2-201ENST00000233146 CCDC62Q6P9F0 684 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 CCDC137Q6PK04 289 aaKnown RBP13.76□□□□□ -0.21
MSH2-201ENST00000233146 TMC7Q7Z402 723 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 TMPRSS6Q8IU80 811 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 LZTR1Q8N653 840 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 DDHD1Q8NEL9 900 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 TRPC4APQ8TEL6 797 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 ANKRD36BP1Q96IX9 119 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.76□□□□□ -0.215e-9■■■■□ 20.5
MSH2-201ENST00000233146 PLA2G4CQ9UP65 541 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 MYH3P11055 1940 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 TOPAZ1Q8N9V7 1692 aa13.76□□□□□ -0.21
MSH2-201ENST00000233146 A0A087WZG4 1122 aa13.75□□□□□ -0.21
MSH2-201ENST00000233146 A0A1W2PRG0 241 aa13.75□□□□□ -0.21
MSH2-201ENST00000233146 DENRO43583 198 aaKnown RBP13.75□□□□□ -0.21
MSH2-201ENST00000233146 XPOTO43592 962 aaKnown RBP13.75□□□□□ -0.21
MSH2-201ENST00000233146 TPPPO94811 219 aa13.75□□□□□ -0.21
MSH2-201ENST00000233146 OCM2P0CE71 109 aa13.75□□□□□ -0.21
MSH2-201ENST00000233146 OCMP0CE72 109 aaPredicted RBP13.75□□□□□ -0.21
MSH2-201ENST00000233146 RHBDF2Q6PJF5 856 aa13.75□□□□□ -0.21
MSH2-201ENST00000233146 KRT27Q7Z3Y8 459 aa13.75□□□□□ -0.21
MSH2-201ENST00000233146 ZDHHC14Q8IZN3 488 aa13.75□□□□□ -0.21
MSH2-201ENST00000233146 GUF1Q8N442 669 aaKnown RBP13.75□□□□□ -0.21
MSH2-201ENST00000233146 DDI1Q8WTU0 396 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms