RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 CBWD6Q4V339 395 aa29.45■■■□□ 2.3
CHMP4B-201ENST00000217402 CBWD3Q5JTY5 395 aa29.45■■■□□ 2.3
CHMP4B-201ENST00000217402 MIIPQ5JXC2 388 aa29.45■■■□□ 2.3
CHMP4B-201ENST00000217402 CBWD5Q5RIA9 395 aa29.45■■■□□ 2.3
CHMP4B-201ENST00000217402 CMTR2Q8IYT2 770 aaKnown RBP29.45■■■□□ 2.3
CHMP4B-201ENST00000217402 RSPH1Q8WYR4 309 aa29.45■■■□□ 2.3
CHMP4B-201ENST00000217402 FAM193BQ96PV7 902 aaPredicted RBP29.45■■■□□ 2.3
CHMP4B-201ENST00000217402 DPP3Q9NY33 737 aa29.45■■■□□ 2.3
CHMP4B-201ENST00000217402 INSL6Q9Y581 213 aa29.45■■■□□ 2.3
CHMP4B-201ENST00000217402 TDRD15B5MCY1 1934 aaKnown RBP29.44■■■□□ 2.3
CHMP4B-201ENST00000217402 TPM2P07951 284 aa29.44■■■□□ 2.3
CHMP4B-201ENST00000217402 MXI1P50539 228 aa29.44■■■□□ 2.3
CHMP4B-201ENST00000217402 COPB1P53618 953 aaKnown RBP29.44■■■□□ 2.3
CHMP4B-201ENST00000217402 TUSC3Q13454 348 aa29.44■■■□□ 2.3
CHMP4B-201ENST00000217402 VWA3BQ502W6 1294 aa29.44■■■□□ 2.3
CHMP4B-201ENST00000217402 TDRD10Q5VZ19 366 aaKnown RBP29.44■■■□□ 2.3
CHMP4B-201ENST00000217402 SV2AQ7L0J3 742 aa29.44■■■□□ 2.3
CHMP4B-201ENST00000217402 TRAPPC11Q7Z392 1133 aa29.44■■■□□ 2.3
CHMP4B-201ENST00000217402 TDHQ8IZJ6 230 aa29.44■■■□□ 2.3
CHMP4B-201ENST00000217402 C1orf127Q8N9H9 656 aa29.44■■■□□ 2.3
CHMP4B-201ENST00000217402 RAD9AQ99638 391 aa29.44■■■□□ 2.3
CHMP4B-201ENST00000217402 TMEM8AQ9HCN3 771 aa29.44■■■□□ 2.3
CHMP4B-201ENST00000217402 ZC3H11AO75152 810 aaKnown RBP eCLIP29.43■■■□□ 2.3
CHMP4B-201ENST00000217402 SERPINC1P01008 464 aa29.43■■■□□ 2.3
CHMP4B-201ENST00000217402 FMO5P49326 533 aa29.43■■■□□ 2.3
CHMP4B-201ENST00000217402 AP3M2P53677 418 aa29.43■■■□□ 2.3
CHMP4B-201ENST00000217402 APTXQ7Z2E3 356 aaKnown RBP29.43■■■□□ 2.3
CHMP4B-201ENST00000217402 RABGGTAQ92696 567 aa29.43■■■□□ 2.3
CHMP4B-201ENST00000217402 NDST4Q9H3R1 872 aa29.43■■■□□ 2.3
CHMP4B-201ENST00000217402 DNAJB4Q9UDY4 337 aa29.43■■■□□ 2.3
CHMP4B-201ENST00000217402 PHACTR2O75167 634 aa29.42■■■□□ 2.3
CHMP4B-201ENST00000217402 C4BPAP04003 597 aaKnown RBP29.42■■■□□ 2.3
CHMP4B-201ENST00000217402 ITGB3P05106 788 aa29.42■■■□□ 2.3
CHMP4B-201ENST00000217402 KRT19P08727 400 aa29.42■■■□□ 2.3
CHMP4B-201ENST00000217402 CYP3A5P20815 502 aa29.42■■■□□ 2.3
CHMP4B-201ENST00000217402 GTF2H1P32780 548 aa29.42■■■□□ 2.3
CHMP4B-201ENST00000217402 MYL7Q01449 175 aa29.42■■■□□ 2.3
CHMP4B-201ENST00000217402 ZACNQ401N2 412 aa29.42■■■□□ 2.3
CHMP4B-201ENST00000217402 KRT39Q6A163 491 aa29.42■■■□□ 2.3
CHMP4B-201ENST00000217402 SCARA3Q6AZY7 606 aa29.42■■■□□ 2.3
CHMP4B-201ENST00000217402 NRDE2Q9H7Z3 1164 aa29.42■■■□□ 2.3
CHMP4B-201ENST00000217402 FANCCQ00597 558 aa29.42■■■□□ 2.3
CHMP4B-201ENST00000217402 DSC1Q08554 894 aa29.42■■■□□ 2.3
CHMP4B-201ENST00000217402 SPOUT1Q5T280 376 aaKnown RBP29.42■■■□□ 2.3
CHMP4B-201ENST00000217402 COLGALT2Q8IYK4 626 aa29.42■■■□□ 2.3
CHMP4B-201ENST00000217402 PAAF1Q9BRP4 392 aa29.42■■■□□ 2.3
CHMP4B-201ENST00000217402 MRPL42Q9Y6G3 142 aaKnown RBP29.42■■■□□ 2.3
CHMP4B-201ENST00000217402 LCHNA4D1U4 455 aa29.41■■■□□ 2.3
CHMP4B-201ENST00000217402 POLR2BP30876 1174 aaKnown RBP29.41■■■□□ 2.3
CHMP4B-201ENST00000217402 PLCB2Q00722 1185 aa29.41■■■□□ 2.3
CHMP4B-201ENST00000217402 C15orf39Q6ZRI6 1047 aa29.41■■■□□ 2.3
CHMP4B-201ENST00000217402 SIX4Q9UIU6 781 aa29.41■■■□□ 2.3
CHMP4B-201ENST00000217402 ITGA11Q9UKX5 1188 aa29.41■■■□□ 2.3
CHMP4B-201ENST00000217402 PPEF2O14830 753 aa29.4■■■□□ 2.3
CHMP4B-201ENST00000217402 MYOGP15173 224 aa29.4■■■□□ 2.3
CHMP4B-201ENST00000217402 CLCNKBP51801 687 aa29.4■■■□□ 2.3
CHMP4B-201ENST00000217402 TAS1R2Q8TE23 839 aa29.4■■■□□ 2.3
CHMP4B-201ENST00000217402 PRO3102Q9H379 93 aa29.4■■■□□ 2.3
CHMP4B-201ENST00000217402 CWH43Q9H720 699 aa29.4■■■□□ 2.3
CHMP4B-201ENST00000217402 LAMA2P24043 3122 aaKnown RBP29.39■■■□□ 2.3
CHMP4B-201ENST00000217402 LRRC10BA6NIK2 292 aa29.39■■■□□ 2.3
CHMP4B-201ENST00000217402 N4BP1O75113 896 aaKnown RBP29.39■■■□□ 2.3
CHMP4B-201ENST00000217402 VNN1O95497 513 aa29.39■■■□□ 2.3
CHMP4B-201ENST00000217402 PBX3P40426 434 aa29.39■■■□□ 2.3
CHMP4B-201ENST00000217402 PIK3CAP42336 1068 aa29.39■■■□□ 2.3
CHMP4B-201ENST00000217402 OR1G1P47890 313 aa29.39■■■□□ 2.3
CHMP4B-201ENST00000217402 C9orf57Q5W0N0 161 aa29.39■■■□□ 2.3
CHMP4B-201ENST00000217402 FIBCD1Q8N539 461 aa29.39■■■□□ 2.3
CHMP4B-201ENST00000217402 AGAP1Q9UPQ3 857 aa29.39■■■□□ 2.3
CHMP4B-201ENST00000217402 PODXLO00592 558 aa29.38■■■□□ 2.29
CHMP4B-201ENST00000217402 CLSTN1O94985 981 aa29.38■■■□□ 2.29
CHMP4B-201ENST00000217402 TRPC3Q13507 836 aa29.38■■■□□ 2.29
CHMP4B-201ENST00000217402 CXorf38Q8TB03 319 aa29.38■■■□□ 2.29
CHMP4B-201ENST00000217402 NAP1L5Q96NT1 182 aaPredicted RBP29.38■■■□□ 2.29
CHMP4B-201ENST00000217402 UTP3Q9NQZ2 479 aaKnown RBP eCLIP29.38■■■□□ 2.297e-9■■■■■ 80.7
CHMP4B-201ENST00000217402 PRG3Q9Y2Y8 225 aaPredicted RBP29.38■■■□□ 2.29
CHMP4B-201ENST00000217402 R3HCC1Q9Y3T6 440 aaKnown RBP29.38■■■□□ 2.29
CHMP4B-201ENST00000217402 GTF3C5Q9Y5Q8 519 aaPredicted RBP29.38■■■□□ 2.29
CHMP4B-201ENST00000217402 LGALS16A8MUM7 142 aa29.38■■■□□ 2.29
CHMP4B-201ENST00000217402 CST3P01034 146 aaPredicted RBP29.38■■■□□ 2.29
CHMP4B-201ENST00000217402 HLA-DRAP01903 254 aa29.38■■■□□ 2.29
CHMP4B-201ENST00000217402 LRPAP1P30533 357 aa29.38■■■□□ 2.29
CHMP4B-201ENST00000217402 SLC11A1P49279 550 aa29.38■■■□□ 2.29
CHMP4B-201ENST00000217402 NCOA4Q13772 614 aa29.38■■■□□ 2.29
CHMP4B-201ENST00000217402 SP7Q8TDD2 431 aaPredicted RBP29.38■■■□□ 2.29
CHMP4B-201ENST00000217402 UROC1Q96N76 676 aa29.38■■■□□ 2.29
CHMP4B-201ENST00000217402 HSFX4A0A1B0GTS1 333 aaPredicted RBP29.37■■■□□ 2.29
CHMP4B-201ENST00000217402 HSFX3A0A1B0GWH4 333 aaPredicted RBP29.37■■■□□ 2.29
CHMP4B-201ENST00000217402 F8W810 466 aa29.37■■■□□ 2.29
CHMP4B-201ENST00000217402 RBP5P82980 135 aa29.37■■■□□ 2.29
CHMP4B-201ENST00000217402 UPP1Q16831 310 aa29.37■■■□□ 2.29
CHMP4B-201ENST00000217402 FILIP1LQ4L180 1135 aa29.37■■■□□ 2.29
CHMP4B-201ENST00000217402 FBXL13Q8NEE6 735 aa29.37■■■□□ 2.29
CHMP4B-201ENST00000217402 ELMO3Q96BJ8 720 aa29.37■■■□□ 2.29
CHMP4B-201ENST00000217402 CRACR2AQ9BSW2 395 aa29.37■■■□□ 2.29
CHMP4B-201ENST00000217402 IFNKQ9P0W0 207 aa29.37■■■□□ 2.29
CHMP4B-201ENST00000217402 ANO9A1A5B4 782 aa29.36■■■□□ 2.29
CHMP4B-201ENST00000217402 LRRN2O75325 713 aa29.36■■■□□ 2.29
CHMP4B-201ENST00000217402 IGFBP6P24592 240 aaPredicted RBP29.36■■■□□ 2.29
CHMP4B-201ENST00000217402 RPL9P32969 192 aaKnown RBP29.36■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms