RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 ZMYM2Q9UBW7 1377 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 NARSO43776 548 aaKnown RBP11.26□□□□□ -0.61
SCN1A-222ENST00000642141 MCF2P10911 925 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 PROZP22891 400 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 AVPR2P30518 371 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 NHLH1Q02575 133 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 CREMQ03060 361 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 CUL4AQ13619 759 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 HAUS6Q7Z4H7 955 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 BRAPQ7Z569 592 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 GRASPQ7Z6J2 395 aaPredicted RBP11.26□□□□□ -0.61
SCN1A-222ENST00000642141 UBALD2Q8IYN6 164 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 PRSS33Q8NF86 280 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 CMASQ8NFW8 434 aaPredicted RBP11.26□□□□□ -0.61
SCN1A-222ENST00000642141 SPIRE2Q8WWL2 714 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 PIK3R5Q8WYR1 880 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 EPSTI1Q96J88 318 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 SNX27Q96L92 541 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 AK8Q96MA6 479 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 CLIC6Q96NY7 704 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 TIPINQ9BVW5 301 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 PRKD2Q9BZL6 878 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 HAPLN2Q9GZV7 340 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 MFSD1Q9H3U5 465 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 PLEKHA4Q9H4M7 779 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 C17orf75Q9HAS0 396 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 CDY1Q9Y6F8 540 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 CLUHO75153 1309 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 MYO10Q9HD67 2058 aa11.26□□□□□ -0.61
SCN1A-222ENST00000642141 PODXLO00592 558 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 CLDN3O15551 220 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 TOM1L1O75674 476 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 ZMYND10O75800 440 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 FAM13AO94988 1023 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 C8AP07357 584 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 CXCL8P10145 99 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 SYT1P21579 422 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 FGFR3P22607 806 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 TNFSF9P41273 254 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 ELAVL2Q12926 359 aaKnown RBP11.25□□□□□ -0.61
SCN1A-222ENST00000642141 TDGQ13569 410 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 NOLC1Q14978 699 aaKnown RBP eCLIP11.25□□□□□ -0.61
SCN1A-222ENST00000642141 SLC10A6Q3KNW5 377 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 PPM1LQ5SGD2 360 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 ZBTB41Q5SVQ8 909 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 AXDND1Q5T1B0 1012 aaPredicted RBP11.25□□□□□ -0.61
SCN1A-222ENST00000642141 LIN9Q5TKA1 542 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.25□□□□□ -0.61
SCN1A-222ENST00000642141 FLCNQ8NFG4 579 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 SLC7A14Q8TBB6 771 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 RAD54LQ92698 747 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 FAM212AQ96EL1 285 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 PANK2Q9BZ23 570 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 BLOC1S4Q9NUP1 217 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 FAM86C1Q9NVL1 165 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 HCFC1R1Q9NWW0 138 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 TUBGCP4Q9UGJ1 667 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 FBXL21Q9UKT6 434 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 MUC6Q6W4X9 2439 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 C2orf16Q68DN1 1984 aa11.25□□□□□ -0.61
SCN1A-222ENST00000642141 K7ENM7 598 aa11.24□□□□□ -0.61
SCN1A-222ENST00000642141 STK25O00506 426 aa11.24□□□□□ -0.61
SCN1A-222ENST00000642141 TRAPPC3O43617 180 aa11.24□□□□□ -0.61
SCN1A-222ENST00000642141 CFHP08603 1231 aa11.24□□□□□ -0.61
SCN1A-222ENST00000642141 KCNE1P15382 129 aa11.24□□□□□ -0.61
SCN1A-222ENST00000642141 FSHRP23945 695 aa11.24□□□□□ -0.61
SCN1A-222ENST00000642141 NMT1P30419 496 aaKnown RBP11.24□□□□□ -0.61
SCN1A-222ENST00000642141 LONP1P36776 959 aaKnown RBP11.24□□□□□ -0.61
SCN1A-222ENST00000642141 LIG4P49917 911 aa11.24□□□□□ -0.61
SCN1A-222ENST00000642141 GUCY2FP51841 1108 aa11.24□□□□□ -0.61
SCN1A-222ENST00000642141 ZC2HC1CQ53FD0 456 aaPredicted RBP11.24□□□□□ -0.61
SCN1A-222ENST00000642141 XKR4Q5GH76 650 aa11.24□□□□□ -0.61
SCN1A-222ENST00000642141 FOXD4L5Q5VV16 416 aaPredicted RBP11.24□□□□□ -0.61
SCN1A-222ENST00000642141 DYMQ7RTS9 669 aa11.24□□□□□ -0.61
SCN1A-222ENST00000642141 HDAC7Q8WUI4 952 aa11.24□□□□□ -0.61
SCN1A-222ENST00000642141 FOXD4L4Q8WXT5 416 aaPredicted RBP11.24□□□□□ -0.61
SCN1A-222ENST00000642141 STAMQ92783 540 aa11.24□□□□□ -0.61
SCN1A-222ENST00000642141 DDX27Q96GQ7 796 aaKnown RBP11.24□□□□□ -0.61
SCN1A-222ENST00000642141 UROC1Q96N76 676 aa11.24□□□□□ -0.61
SCN1A-222ENST00000642141 BACH2Q9BYV9 841 aa11.24□□□□□ -0.61
SCN1A-222ENST00000642141 IKZF4Q9H2S9 585 aa11.24□□□□□ -0.61
SCN1A-222ENST00000642141 SLC38A7Q9NVC3 462 aa11.24□□□□□ -0.61
SCN1A-222ENST00000642141 ZDHHC7Q9NXF8 308 aa11.24□□□□□ -0.61
SCN1A-222ENST00000642141 LARSQ9P2J5 1176 aaKnown RBP11.24□□□□□ -0.61
SCN1A-222ENST00000642141 FBXW11Q9UKB1 542 aa11.24□□□□□ -0.61
SCN1A-222ENST00000642141 TBX20Q9UMR3 447 aa11.24□□□□□ -0.61
SCN1A-222ENST00000642141 NUB1Q9Y5A7 615 aa11.24□□□□□ -0.61
SCN1A-222ENST00000642141 LACTBL1A8MY62 500 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 TISP43B9A030 160 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 H0Y858 1186 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 TMEM189-UBE2V1I3L0A0 370 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 HNRNPDLO14979 420 aaKnown RBP11.23□□□□□ -0.61
SCN1A-222ENST00000642141 TRAK2O60296 914 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 TBCAO75347 108 aaKnown RBP11.23□□□□□ -0.61
SCN1A-222ENST00000642141 BMP15O95972 392 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 LAMP2P13473 410 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 PDCP20941 246 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 HOXD11P31277 338 aaPredicted RBP11.23□□□□□ -0.61
SCN1A-222ENST00000642141 MRE11P49959 708 aa11.23□□□□□ -0.61
SCN1A-222ENST00000642141 CDR1P51861 262 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms