RNA–Protein interactions for RNA: ENST00000638144.1

CLN6-225, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 576 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-225	ENST00000638144	NECAB3	Q96P71	396 aa	Predicted RBP	13.65	□□□□□ -0.22
CLN6-225	ENST00000638144	ASB2	Q96Q27	587 aa		13.65	□□□□□ -0.22
CLN6-225	ENST00000638144	HERC2P3	Q9BVR0	1158 aa		13.65	□□□□□ -0.22
CLN6-225	ENST00000638144	COLEC11	Q9BWP8	271 aa		13.65	□□□□□ -0.22
CLN6-225	ENST00000638144	APOL5	Q9BWW9	433 aa		13.65	□□□□□ -0.22
CLN6-225	ENST00000638144	SLC39A2	Q9NP94	309 aa		13.65	□□□□□ -0.22
CLN6-225	ENST00000638144	NGRN	Q9NPE2	291 aa	Known RBP	13.65	□□□□□ -0.22
CLN6-225	ENST00000638144	CNTN3	Q9P232	1028 aa		13.65	□□□□□ -0.22
CLN6-225	ENST00000638144	ADAM28	Q9UKQ2	775 aa		13.65	□□□□□ -0.22
CLN6-225	ENST00000638144	FAM237A	A0A1B0GTK4	181 aa		13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	GOLGA8IP	A6NC78	632 aa		13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	GOLGA8J	A6NMD2	632 aa		13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	KLRC4	O43908	158 aa		13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	TADA2A	O75478	443 aa		13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	SOD2	P04179	222 aa		13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	UROD	P06132	367 aa		13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	CLTA	P09496	248 aa		13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	ADAM15	Q13444	863 aa		13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	COL19A1	Q14993	1142 aa		13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	CTC1	Q2NKJ3	1217 aa		13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	XKR4	Q5GH76	650 aa		13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	CNNM4	Q6P4Q7	775 aa		13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	GLYCTK	Q8IVS8	523 aa		13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	EFHB	Q8N7U6	833 aa		13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	MRPL43	Q8N983	215 aa	Known RBP	13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	ATXN2L	Q8WWM7	1075 aa	Known RBP	13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	KIF12	Q96FN5	646 aa		13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	CBWD1	Q9BRT8	395 aa		13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	PCIF1	Q9H4Z3	704 aa		13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	RPF1	Q9H9Y2	349 aa	Known RBP	13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	CLEC1B	Q9P126	229 aa		13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	AGO2	Q9UKV8	859 aa	Known RBP	13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	PCDHB13	Q9Y5F0	798 aa		13.64	□□□□□ -0.23
CLN6-225	ENST00000638144	TTC26	A0AVF1	554 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	PODXL	O00592	558 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	CLASP2	O75122	1294 aa	Known RBP	13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	EFEMP2	O95967	443 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	NFIC	P08651	508 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	KCNE1	P15382	129 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	RPL17	P18621	184 aa	Known RBP	13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	SCP2	P22307	547 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	BRCC3	P46736	316 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	GLUD2	P49448	558 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	WNT7B	P56706	349 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	PPP2R3A	Q06190	1150 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	EHHADH	Q08426	723 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	TJAP1	Q5JTD0	557 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	RTP2	Q5QGT7	225 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	FAM171A1	Q5VUB5	890 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	JADE1	Q6IE81	842 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	PDE12	Q6L8Q7	609 aa	Known RBP	13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	PRSS55	Q6UWB4	352 aa	Predicted RBP	13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	CD300LG	Q6UXG3	332 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	KRBA2	Q6ZNG9	492 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	CEP57	Q86XR8	500 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	RNF168	Q8IYW5	571 aa	Predicted RBP	13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	TMEM87A	Q8NBN3	555 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	FEZF2	Q8TBJ5	459 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	RIN2	Q8WYP3	895 aa	Predicted RBP	13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	PYM1	Q9BRP8	204 aa	Known RBP	13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	FAM213A	Q9BRX8	229 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	CDH22	Q9UJ99	828 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	CPSF3	Q9UKF6	684 aa	Known RBP	13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	EXOC7	Q9UPT5	735 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	STYXL1	Q9Y6J8	313 aa		13.63	□□□□□ -0.23
CLN6-225	ENST00000638144	SF3B1	O75533	1304 aa	Known RBP eCLIP	13.63	□□□□□ -0.23	8e-9	■■■■■ 155.1
CLN6-225	ENST00000638144	CARNS1	A5YM72	827 aa		13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	GOLGA6L4	A6NEF3	574 aa		13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	PPEF2	O14830	753 aa		13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	GADD45B	O75293	160 aa	Predicted RBP	13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	B3GAT3	O94766	335 aa		13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	ZNF202	O95125	648 aa		13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	CNP	P09543	421 aa	Known RBP	13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	IL9	P15248	144 aa		13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	EPCAM	P16422	314 aa		13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	ABCD1	P33897	745 aa		13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	ALCAM	Q13740	583 aa		13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	UPP1	Q16831	310 aa		13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	LEXM	Q3ZCV2	418 aa		13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	KMT5B	Q4FZB7	885 aa		13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	SLFN12L	Q6IEE8	588 aa		13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	PTCRA	Q6ISU1	281 aa	Predicted RBP	13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	KIAA1841	Q6NSI8	718 aa		13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	CRELD2	Q6UXH1	353 aa	Predicted RBP	13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	EPM2AIP1	Q7L775	607 aa	Predicted RBP	13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	ADAMTS19	Q8TE59	1207 aa		13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	SCFD1	Q8WVM8	642 aa		13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	MRPL17	Q9NRX2	175 aa	Known RBP	13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	EXOC1	Q9NV70	894 aa		13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	SLC38A7	Q9NVC3	462 aa		13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	HCFC2	Q9Y5Z7	792 aa		13.62	□□□□□ -0.23
CLN6-225	ENST00000638144	SCN1A	P35498	2009 aa		13.61	□□□□□ -0.23
CLN6-225	ENST00000638144	PVALEF	A0A1B0GWK0	134 aa		13.61	□□□□□ -0.23
CLN6-225	ENST00000638144	BMP1	P13497	986 aa		13.61	□□□□□ -0.23
CLN6-225	ENST00000638144	DSG1	Q02413	1049 aa		13.61	□□□□□ -0.23
CLN6-225	ENST00000638144	STK4	Q13043	487 aa		13.61	□□□□□ -0.23
CLN6-225	ENST00000638144	BMS1	Q14692	1282 aa	Known RBP	13.61	□□□□□ -0.23
CLN6-225	ENST00000638144	AAK1	Q2M2I8	961 aa		13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms