RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 GEMIN4P57678 1058 aaKnown RBP6.46□□□□□ -1.38
SCN1A-217ENST00000637988 DEFB128Q7Z7B8 93 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 RNF135Q8IUD6 432 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 ARMC2Q8NEN0 867 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 ACSF2Q96CM8 615 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-217ENST00000637988 LXNQ9BS40 222 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 MROH8Q9H579 483 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 TET3O43151 1660 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 NKRFO15226 690 aaKnown RBP eCLIP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 CTNND1O60716 968 aaKnown RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ASS1P00966 412 aaKnown RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 MBL2P11226 248 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 CAV1Q03135 178 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ARL6IP4Q66PJ3 421 aaKnown RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ZNF544Q6NX49 715 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 TRIM65Q6PJ69 517 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 PASD1Q8IV76 773 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ACTR5Q9H9F9 607 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 NDE1Q9NXR1 346 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ANAPC7Q9UJX3 599 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 FAF1Q9UNN5 650 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 MINPP1Q9UNW1 487 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ZBTB7BO15156 539 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 NCAM2O15394 837 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 HBP1O60381 514 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 MCF2P10911 925 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ALOX15P16050 662 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 PLCG1P19174 1290 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 CNTN1Q12860 1018 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ALG11Q2TAA5 492 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 SUSD4Q5VX71 490 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 HLA-DQA1Q5Y7H0 255 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ANKRD49Q8WVL7 239 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 PCDHB15Q9Y5E8 787 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 SMIM22K7EJ46 135 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 GMPSP49915 693 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 NFIAQ12857 509 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ELAVL2Q12926 359 aaKnown RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ZNF284Q2VY69 593 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 PROM2Q8N271 834 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 FAM133AQ8N9E0 248 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 GMCL1Q96IK5 515 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 GPR101Q96P66 508 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 PRPF18Q99633 342 aaKnown RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 RNF208Q9H0X6 261 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 HAUS4Q9H6D7 363 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 DMAP1Q9NPF5 467 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 MRFAP1Q9Y605 127 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 PSMA4P25789 261 aaKnown RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ADD1P35611 737 aaKnown RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 VAMP7P51809 220 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 COPB1P53618 953 aaKnown RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 RALGDSQ12967 914 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ICE2Q659A1 982 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 WDR75Q8IWA0 830 aaKnown RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 OSBPL6Q9BZF3 934 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ITIH6Q6UXX5 1313 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 BTBD18B2RXH4 712 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 PODXLO00592 558 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ORC4O43929 436 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 RPN2P04844 631 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ETFBP38117 255 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 INHBEP58166 350 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 P3H1Q32P28 736 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 TRIM60Q495X7 471 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 FASTKD1Q53R41 847 aaKnown RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 NAA35Q5VZE5 725 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 LCORLQ8N3X6 602 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ABCG4Q9H172 646 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 LRRC14BA6NHZ5 514 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 TK2O00142 265 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 SLC16A4O15374 487 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ZRANB2O95218 330 aaKnown RBP eCLIP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 MPOP05164 745 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 KRT4P19013 534 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 SCNN1BP51168 640 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 TMEM62Q0P6H9 643 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 PPM1LQ5SGD2 360 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 LRRC8BQ6P9F7 803 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 LCA5Q86VQ0 697 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 DGKHQ86XP1 1220 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 BBS7Q8IWZ6 715 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 MRPL9Q9BYD2 267 aaKnown RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 INTS9Q9NV88 658 aaKnown RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 UXTQ9UBK9 157 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 DBR1Q9UK59 544 aaKnown RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 PTPRTO14522 1441 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 CHD4Q14839 1912 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 F5H5T6 163 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 COPEO14579 308 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ALDH2P05091 517 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ERBB3P21860 1342 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 KIZQ2M2Z5 673 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ZMYM1Q5SVZ6 1142 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 CCDC60Q8IWA6 550 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 ZNF557Q8N988 423 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-217ENST00000637988 AGBL3Q8NEM8 1001 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 GALNT8Q9NY28 637 aa6.45□□□□□ -1.38
SCN1A-217ENST00000637988 RWDD2AQ9UIY3 292 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms