RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 ZSCAN5CA6NGD5 496 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-214ENST00000637038 SMIM23A6NLE4 172 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 CHMP2AO43633 222 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 ADCY3O60266 1144 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 ATP5HO75947 161 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 MYBL1P10243 752 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 GZMAP12544 262 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 ATF2P15336 505 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 MXI1P50539 228 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 HADHBP55084 474 aaKnown RBP4.25□□□□□ -1.73
SCN1A-214ENST00000637038 ZNF280AP59817 542 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-214ENST00000637038 CXCL9Q07325 125 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 BFSP1Q12934 665 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 CCL15Q16663 113 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 ANKRD20A8PQ5CZ79 823 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 SLC9A9Q8IVB4 645 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 ZSWIM1Q9BR11 485 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 TMEM109Q9BVC6 243 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 LRRC4CQ9HCJ2 640 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 KLHL14Q9P2G3 628 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 SNX24Q9Y343 169 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 FRMPD4Q14CM0 1322 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 SOBPA7XYQ1 873 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 MAPK13O15264 365 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 THAP12O43422 761 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 LUC7L3O95232 432 aaKnown RBP4.25□□□□□ -1.73
SCN1A-214ENST00000637038 FAM163BP0C2L3 166 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 PYGBP11216 843 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 RARGP13631 454 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 SHMT1P34896 483 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 RASSF2P50749 326 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 SCNN1DP51172 638 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 STAT2P52630 851 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 CLNS1AP54105 237 aaKnown RBP4.25□□□□□ -1.73
SCN1A-214ENST00000637038 STRN3Q13033 797 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 PRKG1Q13976 671 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 MESDQ14696 234 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 RINT1Q6NUQ1 792 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 CYB5D1Q6P9G0 228 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 MCF2L2Q86YR7 1114 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 ANKRD35Q8N283 1001 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 TMEM199Q8N511 208 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 XXYLT1Q8NBI6 393 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 GLIS3Q8NEA6 775 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 ETNPPLQ8TBG4 499 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 NT5C1BQ96P26 610 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 ZNF577Q9BSK1 485 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 AZI2Q9H6S1 392 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 PPCSQ9HAB8 311 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 KCNK9Q9NPC2 374 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 UBE2TQ9NPD8 197 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-214ENST00000637038 TXLNGQ9NUQ3 528 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 ASTN1O14525 1302 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 O00370 1275 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 CFBP00751 764 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 FTLP02792 175 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-214ENST00000637038 CHN1P15882 459 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 ITIH2P19823 946 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 STX2P32856 288 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 HOXD13P35453 343 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 SLC1A1P43005 524 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 CRKP46108 304 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 SCTRP47872 440 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 VAMP7P51809 220 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 IL9RQ01113 521 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 PPIL2Q13356 520 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 PLS1Q14651 629 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 SGO2Q562F6 1265 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 WDR44Q5JSH3 913 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 ZFYVE27Q5T4F4 411 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 ERMARDQ5T6L9 678 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 DUPD1Q68J44 220 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 RSBN1LQ6PCB5 846 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-214ENST00000637038 CCDC137Q6PK04 289 aaKnown RBP4.25□□□□□ -1.73
SCN1A-214ENST00000637038 DDX42Q86XP3 938 aaKnown RBP eCLIP4.25□□□□□ -1.73
SCN1A-214ENST00000637038 RIBC1Q8N443 379 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-214ENST00000637038 PROCA1Q8NCQ7 364 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-214ENST00000637038 OR2W6PQ8NHA6 318 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 SEC14L1Q92503 715 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 ZNF653Q96CK0 615 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 DYDC2Q96IM9 177 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 SERPINB12Q96P63 405 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 TRIM51Q9BSJ1 452 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 SYT11Q9BT88 431 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 RUSC1Q9BVN2 902 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 MRIQ9BWK5 157 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 FGFBP2Q9BYJ0 223 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 AGPAT3Q9NRZ7 376 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 PCYOX1Q9UHG3 505 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 BAIAP2L1Q9UHR4 511 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 SLC12A6Q9UHW9 1150 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 TRPC6Q9Y210 931 aa4.25□□□□□ -1.73
SCN1A-214ENST00000637038 F5H6K3 240 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 PIK3CDO00329 1044 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 MSH4O15457 936 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 PPP1R11O60927 126 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 KLRC3Q07444 240 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 PPP2R5CQ13362 524 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 CTTNQ14247 550 aaKnown RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 TCEAL1Q15170 157 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms