RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 SLC20A1Q8WUM9 679 aa12.36□□□□□ -0.43
CLN6-217ENST00000636964 ARL8AQ96BM9 186 aa12.36□□□□□ -0.43
CLN6-217ENST00000636964 ALS2CR12Q96Q35 445 aa12.36□□□□□ -0.43
CLN6-217ENST00000636964 H0YCG3 227 aa12.36□□□□□ -0.43
CLN6-217ENST00000636964 SMAPO00193 183 aa12.36□□□□□ -0.43
CLN6-217ENST00000636964 LGR5O75473 907 aa12.36□□□□□ -0.43
CLN6-217ENST00000636964 FSBPO95073 299 aa12.36□□□□□ -0.43
CLN6-217ENST00000636964 TNNI1P19237 187 aa12.36□□□□□ -0.43
CLN6-217ENST00000636964 CLCN3P51790 818 aa12.36□□□□□ -0.43
CLN6-217ENST00000636964 LAMTOR4Q0VGL1 99 aa12.36□□□□□ -0.43
CLN6-217ENST00000636964 VPS36Q86VN1 386 aa12.36□□□□□ -0.43
CLN6-217ENST00000636964 CDR2LQ86X02 465 aaPredicted RBP12.36□□□□□ -0.43
CLN6-217ENST00000636964 RPUSD2Q8IZ73 545 aaKnown RBP12.36□□□□□ -0.43
CLN6-217ENST00000636964 ZNF516Q92618 1163 aa12.36□□□□□ -0.43
CLN6-217ENST00000636964 TATDN2Q93075 761 aa12.36□□□□□ -0.43
CLN6-217ENST00000636964 NLRP4Q96MN2 994 aa12.36□□□□□ -0.43
CLN6-217ENST00000636964 TCHPQ9BT92 498 aa12.36□□□□□ -0.43
CLN6-217ENST00000636964 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.36□□□□□ -0.43
CLN6-217ENST00000636964 SMARCAL1Q9NZC9 954 aa12.36□□□□□ -0.43
CLN6-217ENST00000636964 ADCY3O60266 1144 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 CSDE1O75534 798 aaKnown RBP12.35□□□□□ -0.43
CLN6-217ENST00000636964 ZNF286BP0CG31 522 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 ARHGAP1Q07960 439 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 AENQ8WTP8 325 aaKnown RBP12.35□□□□□ -0.43
CLN6-217ENST00000636964 PPP1R13LQ8WUF5 828 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 AFG1LQ8WV93 481 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 MIEF2Q96C03 454 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 CABS1Q96KC9 395 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 FAM167AQ96KS9 214 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 MSTO1Q9BUK6 570 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 TMEM8AQ9HCN3 771 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 EHD2Q9NZN4 543 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 EXTL3O43909 919 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 KIF4AO95239 1232 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 SNAI1O95863 264 aaPredicted RBP12.35□□□□□ -0.43
CLN6-217ENST00000636964 CALCAP01258 141 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 NEFHP12036 1026 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 ABCB4P21439 1286 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 GCLCP48506 637 aaPredicted RBP12.35□□□□□ -0.43
CLN6-217ENST00000636964 FKBP1BP68106 108 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 MRPS25P82663 173 aaKnown RBP12.35□□□□□ -0.43
CLN6-217ENST00000636964 CRELD2Q6UXH1 353 aaPredicted RBP12.35□□□□□ -0.43
CLN6-217ENST00000636964 PLPPR4Q7Z2D5 763 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 TSEN2Q8NCE0 465 aaKnown RBP12.35□□□□□ -0.43
CLN6-217ENST00000636964 CAGE1Q8TC20 777 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 KREMEN1Q96MU8 473 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 SMARCAD1Q9H4L7 1026 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 TAS2R14Q9NYV8 317 aa12.35□□□□□ -0.43
CLN6-217ENST00000636964 P4HA2O15460 535 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 TNFAIP3P21580 790 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 PDCLQ13371 301 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 EFCAB12Q6NXP0 572 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 MAMDC4Q6UXC1 1216 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 FBXL13Q8NEE6 735 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 OLIG1Q8TAK6 271 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 GTF3C2Q8WUA4 911 aaPredicted RBP12.34□□□□□ -0.43
CLN6-217ENST00000636964 PSPC1Q8WXF1 523 aaKnown RBP12.34□□□□□ -0.43
CLN6-217ENST00000636964 DHX38Q92620 1227 aaKnown RBP12.34□□□□□ -0.43
CLN6-217ENST00000636964 FNBP1Q96RU3 617 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 RAB20Q9NX57 234 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 SUCLA2Q9P2R7 463 aaPredicted RBP12.34□□□□□ -0.43
CLN6-217ENST00000636964 DIS3Q9Y2L1 958 aaKnown RBP12.34□□□□□ -0.43
CLN6-217ENST00000636964 RBM47A0AV96 593 aaKnown RBP12.34□□□□□ -0.43
CLN6-217ENST00000636964 ANO9A1A5B4 782 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 TUBBP07437 444 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 PRAMEF19Q5SWL8 479 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 IER5Q5VY09 327 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 SCARA3Q6AZY7 606 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 FAM228AQ86W67 206 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 TMC2Q8TDI7 906 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 MORF4L1Q9UBU8 362 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 SNX12Q9UMY4 172 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 PTPRJQ12913 1337 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 UNCXA6NJT0 531 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 CYP26A1O43174 497 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 STRNO43815 780 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 SGPL1O95470 568 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 ELF1P32519 619 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 GALCP54803 685 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 SPRED3Q2MJR0 410 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 RNF10Q8N5U6 811 aaKnown RBP12.34□□□□□ -0.43
CLN6-217ENST00000636964 NPLOC4Q8TAT6 608 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 PARK7Q99497 189 aaKnown RBP12.34□□□□□ -0.43
CLN6-217ENST00000636964 TLR10Q9BXR5 811 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 RBAKQ9NYW8 714 aaPredicted RBP12.34□□□□□ -0.43
CLN6-217ENST00000636964 SLC45A1Q9Y2W3 748 aa12.34□□□□□ -0.43
CLN6-217ENST00000636964 LGALS2P05162 132 aa12.33□□□□□ -0.44
CLN6-217ENST00000636964 H2AFZP0C0S5 128 aa12.33□□□□□ -0.44
CLN6-217ENST00000636964 INSRRP14616 1297 aa12.33□□□□□ -0.44
CLN6-217ENST00000636964 TNFSF9P41273 254 aa12.33□□□□□ -0.44
CLN6-217ENST00000636964 ZNF157P51786 506 aaPredicted RBP12.33□□□□□ -0.44
CLN6-217ENST00000636964 BIRC3Q13489 604 aa12.33□□□□□ -0.44
CLN6-217ENST00000636964 PREPLQ4J6C6 727 aaPredicted RBP12.33□□□□□ -0.44
CLN6-217ENST00000636964 H2AFVQ71UI9 128 aa12.33□□□□□ -0.44
CLN6-217ENST00000636964 SH2D3CQ8N5H7 860 aa12.33□□□□□ -0.44
CLN6-217ENST00000636964 SLC30A5Q8TAD4 765 aa12.33□□□□□ -0.44
CLN6-217ENST00000636964 TARSL2A2RTX5 802 aaKnown RBP12.33□□□□□ -0.44
CLN6-217ENST00000636964 CLDN3O15551 220 aa12.33□□□□□ -0.44
CLN6-217ENST00000636964 GH1P01241 217 aa12.33□□□□□ -0.44
CLN6-217ENST00000636964 ZBTB48P10074 688 aaPredicted RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms