RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 MEFVO15553 781 aaPredicted RBP18.18■□□□□ 0.5
CLN3-252ENST00000636907 KRT86O43790 486 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 B4GALT4O60513 344 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 PHACTR2O75167 634 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 IL18RAPO95256 599 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 ANXA13P27216 316 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 GCNT1Q02742 428 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 KIF5AQ12840 1032 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 SNX17Q15036 470 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 PCBP1Q15365 356 aaKnown RBP eCLIP18.18■□□□□ 0.5
CLN3-252ENST00000636907 WDR44Q5JSH3 913 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 SCARA3Q6AZY7 606 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 SPOPLQ6IQ16 392 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 TAF2Q6P1X5 1199 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 TRAPPC11Q7Z392 1133 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 FAM71AQ8IYT1 594 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 OLIG1Q8TAK6 271 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 ADPGKQ9BRR6 497 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 SYT11Q9BT88 431 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 C1orf112Q9NSG2 853 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 SAGE1Q9NXZ1 904 aa18.18■□□□□ 0.5
CLN3-252ENST00000636907 PJA2O43164 708 aa18.17■□□□□ 0.5
CLN3-252ENST00000636907 CASQ1P31415 396 aa18.17■□□□□ 0.5
CLN3-252ENST00000636907 USP8P40818 1118 aa18.17■□□□□ 0.5
CLN3-252ENST00000636907 TFAMQ00059 246 aaKnown RBP18.17■□□□□ 0.5
CLN3-252ENST00000636907 NCOA4Q13772 614 aa18.17■□□□□ 0.5
CLN3-252ENST00000636907 DUOXA2Q1HG44 320 aa18.17■□□□□ 0.5
CLN3-252ENST00000636907 FAM47CQ5HY64 1035 aa18.17■□□□□ 0.5
CLN3-252ENST00000636907 VPS36Q86VN1 386 aa18.17■□□□□ 0.5
CLN3-252ENST00000636907 SLC35F6Q8N357 371 aa18.17■□□□□ 0.5
CLN3-252ENST00000636907 TSGA10Q9BZW7 698 aa18.17■□□□□ 0.5
CLN3-252ENST00000636907 APOBEC3GQ9HC16 384 aaKnown RBP18.17■□□□□ 0.5
CLN3-252ENST00000636907 NENFQ9UMX5 172 aa18.17■□□□□ 0.5
CLN3-252ENST00000636907 DUSP10Q9Y6W6 482 aa18.17■□□□□ 0.5
CLN3-252ENST00000636907 LACTBL1A8MY62 500 aa18.16■□□□□ 0.5
CLN3-252ENST00000636907 DDX3XO00571 662 aaKnown RBP eCLIP18.16■□□□□ 0.5
CLN3-252ENST00000636907 INHAP05111 366 aa18.16■□□□□ 0.5
CLN3-252ENST00000636907 TMEM191BP0C7N4 346 aa18.16■□□□□ 0.5
CLN3-252ENST00000636907 CRYBB1P53674 252 aaPredicted RBP18.16■□□□□ 0.5
CLN3-252ENST00000636907 POU5F1Q01860 360 aaKnown RBP18.16■□□□□ 0.5
CLN3-252ENST00000636907 NCBP1Q09161 790 aaKnown RBP18.16■□□□□ 0.5
CLN3-252ENST00000636907 BMS1Q14692 1282 aaKnown RBP18.16■□□□□ 0.5
CLN3-252ENST00000636907 KYAT1Q16773 422 aa18.16■□□□□ 0.5
CLN3-252ENST00000636907 DCAF4L1Q3SXM0 396 aa18.16■□□□□ 0.5
CLN3-252ENST00000636907 PCSK9Q8NBP7 692 aaKnown RBP18.16■□□□□ 0.5
CLN3-252ENST00000636907 LNX1Q8TBB1 728 aaPredicted RBP18.16■□□□□ 0.5
CLN3-252ENST00000636907 DHX38Q92620 1227 aaKnown RBP18.16■□□□□ 0.5
CLN3-252ENST00000636907 MYO1AQ9UBC5 1043 aa18.16■□□□□ 0.5
CLN3-252ENST00000636907 NAGPAQ9UK23 515 aa18.16■□□□□ 0.5
CLN3-252ENST00000636907 GRIN2DO15399 1336 aa18.16■□□□□ 0.5
CLN3-252ENST00000636907 RIOK3O14730 519 aaKnown RBP18.15■□□□□ 0.5
CLN3-252ENST00000636907 NPTXRO95502 500 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 CST3P01034 146 aaPredicted RBP18.15■□□□□ 0.5
CLN3-252ENST00000636907 ARHGEF6Q15052 776 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 SLC10A6Q3KNW5 377 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 ENOSF1Q7L5Y1 443 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 ZNF710Q8N1W2 664 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 FAM81BQ96LP2 452 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 ARID3AQ99856 593 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 LUC7LQ9NQ29 371 aaKnown RBP18.15■□□□□ 0.5
CLN3-252ENST00000636907 CENPFP49454 3210 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 MROH7Q68CQ1 1323 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 CYP26A1O43174 497 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 NFICP08651 508 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 GRM5P41594 1212 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 NOP14P78316 857 aaKnown RBP18.15■□□□□ 0.5
CLN3-252ENST00000636907 MRPS6P82932 125 aaKnown RBP18.15■□□□□ 0.5
CLN3-252ENST00000636907 NAB2Q15742 525 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 ALKBH5Q6P6C2 394 aaKnown RBP18.15■□□□□ 0.5
CLN3-252ENST00000636907 NOTUMQ6P988 496 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 SLC27A1Q6PCB7 646 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 RNF180Q86T96 592 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 SESTD1Q86VW0 696 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 GLYCTKQ8IVS8 523 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 TXLNBQ8N3L3 684 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 SLAIN1Q8ND83 568 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 SLC30A5Q8TAD4 765 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 SLC20A1Q8WUM9 679 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 WNT8BQ93098 351 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 ANKRD36BP1Q96IX9 119 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 ACAP3Q96P50 834 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 PACSIN1Q9BY11 444 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 EIF2AQ9BY44 585 aaKnown RBP18.15■□□□□ 0.5
CLN3-252ENST00000636907 CELF4Q9BZC1 486 aaKnown RBP18.15■□□□□ 0.5
CLN3-252ENST00000636907 TSKSQ9UJT2 592 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 NUB1Q9Y5A7 615 aa18.15■□□□□ 0.5
CLN3-252ENST00000636907 MACROD2A1Z1Q3 448 aa18.14■□□□□ 0.49
CLN3-252ENST00000636907 SGPL1O95470 568 aa18.14■□□□□ 0.49
CLN3-252ENST00000636907 TNNC2P02585 160 aa18.14■□□□□ 0.49
CLN3-252ENST00000636907 PRMT2P55345 433 aa18.14■□□□□ 0.49
CLN3-252ENST00000636907 CUL2Q13617 745 aa18.14■□□□□ 0.49
CLN3-252ENST00000636907 C10orf76Q5T2E6 689 aa18.14■□□□□ 0.49
CLN3-252ENST00000636907 JADE1Q6IE81 842 aa18.14■□□□□ 0.49
CLN3-252ENST00000636907 SERINC5Q86VE9 423 aa18.14■□□□□ 0.49
CLN3-252ENST00000636907 U2AF1L4Q8WU68 220 aaKnown RBP18.14■□□□□ 0.49
CLN3-252ENST00000636907 AGPAT1Q99943 283 aa18.14■□□□□ 0.49
CLN3-252ENST00000636907 ASB7Q9H672 318 aa18.14■□□□□ 0.49
CLN3-252ENST00000636907 UMODL1Q5DID0 1318 aa18.14■□□□□ 0.49
CLN3-252ENST00000636907 CLSTN1O94985 981 aa18.13■□□□□ 0.49
CLN3-252ENST00000636907 ASS1P00966 412 aaKnown RBP18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms