RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 BEGAINQ9BUH8 593 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 CCDC94Q9BW85 323 aaPredicted RBP11.4□□□□□ -0.58
CLN3-248ENST00000636355 GPR88Q9GZN0 384 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 HMX1Q9NP08 348 aaPredicted RBP11.4□□□□□ -0.58
CLN3-248ENST00000636355 TOPORSQ9NS56 1045 aaPredicted RBP11.4□□□□□ -0.58
CLN3-248ENST00000636355 WBP1LQ9NX94 342 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 NENFQ9UMX5 172 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 REXO2Q9Y3B8 237 aaKnown RBP11.4□□□□□ -0.58
CLN3-248ENST00000636355 TRPV2Q9Y5S1 764 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 SQORQ9Y6N5 450 aa11.4□□□□□ -0.58
CLN3-248ENST00000636355 TANC1Q9C0D5 1861 aa11.4□□□□□ -0.59
CLN3-248ENST00000636355 PTPRJQ12913 1337 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 ANO9A1A5B4 782 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 TREHO43280 583 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 STAU1O95793 577 aaKnown RBP11.39□□□□□ -0.59
CLN3-248ENST00000636355 ASS1P00966 412 aaKnown RBP11.39□□□□□ -0.59
CLN3-248ENST00000636355 STAG3L1P0CL83 205 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 HARSP12081 509 aaKnown RBP11.39□□□□□ -0.59
CLN3-248ENST00000636355 BPIFB4P59827 614 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 YWHAEP62258 255 aaKnown RBP11.39□□□□□ -0.59
CLN3-248ENST00000636355 NOP14P78316 857 aaKnown RBP11.39□□□□□ -0.59
CLN3-248ENST00000636355 PTK2Q05397 1052 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 TRIM32Q13049 653 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 BIRC3Q13489 604 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 NCOA4Q13772 614 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 TUBB2AQ13885 445 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 ZBTB41Q5SVQ8 909 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 EEF1DP3Q658K8 133 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 PPP1R2P3Q6NXS1 205 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 CXCL17Q6UXB2 119 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 ZBTB33Q86T24 672 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 ZNF677Q86XU0 584 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 ARHGEF19Q8IW93 802 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 PPM1KQ8N3J5 372 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 TTC39CQ8N584 583 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 USP38Q8NB14 1042 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 UBE2Q2Q8WVN8 375 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 DNAJB3Q8WWF6 145 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 ZBTB10Q96DT7 871 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 TUBB2BQ9BVA1 445 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 VRTNQ9H8Y1 702 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 UBE2TQ9NPD8 197 aaPredicted RBP11.39□□□□□ -0.59
CLN3-248ENST00000636355 ITGA11Q9UKX5 1188 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 TRIP11Q15643 1979 aa11.39□□□□□ -0.59
CLN3-248ENST00000636355 A0A0A6YYK5 440 aaPredicted RBP11.38□□□□□ -0.59
CLN3-248ENST00000636355 ZNF263O14978 683 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 VNN1O95497 513 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 PLEKP08567 350 aaPredicted RBP11.38□□□□□ -0.59
CLN3-248ENST00000636355 CXCL8P10145 99 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 HOXA11P31270 313 aaPredicted RBP11.38□□□□□ -0.59
CLN3-248ENST00000636355 ATICP31939 592 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 TNFSF9P41273 254 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 ARHGAP25P42331 645 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 PDE6CP51160 858 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 YARSP54577 528 aaKnown RBP11.38□□□□□ -0.59
CLN3-248ENST00000636355 APBA1Q02410 837 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 PTK7Q13308 1070 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 CUL2Q13617 745 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 HIC1Q14526 733 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 NAB2Q15742 525 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 KCNA10Q16322 511 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 SGSM1Q2NKQ1 1148 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 CCDC122Q5T0U0 273 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 THNSL1Q8IYQ7 743 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 RNF10Q8N5U6 811 aaKnown RBP11.38□□□□□ -0.59
CLN3-248ENST00000636355 ARRDC4Q8NCT1 418 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 TRIM58Q8NG06 486 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 EPS8L1Q8TE68 723 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 ZNF516Q92618 1163 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 SEMA4DQ92854 862 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 GLT1D1Q96MS3 346 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 ACAP3Q96P50 834 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 OSMRQ99650 979 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 CELF4Q9BZC1 486 aaKnown RBP11.38□□□□□ -0.59
CLN3-248ENST00000636355 MTMR12Q9C0I1 747 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 SENP6Q9GZR1 1112 aaPredicted RBP11.38□□□□□ -0.59
CLN3-248ENST00000636355 NIF3L1Q9GZT8 377 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 CHST12Q9NRB3 414 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 AJAP1Q9UKB5 411 aaPredicted RBP11.38□□□□□ -0.59
CLN3-248ENST00000636355 CNTN6Q9UQ52 1028 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 PCDHA13Q9Y5I0 950 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 HTTP42858 3142 aa11.38□□□□□ -0.59
CLN3-248ENST00000636355 XPOTO43592 962 aaKnown RBP11.37□□□□□ -0.59
CLN3-248ENST00000636355 PHACTR2O75167 634 aa11.37□□□□□ -0.59
CLN3-248ENST00000636355 P4HA1P13674 534 aa11.37□□□□□ -0.59
CLN3-248ENST00000636355 RAB27AP51159 221 aa11.37□□□□□ -0.59
CLN3-248ENST00000636355 ACLYP53396 1101 aa11.37□□□□□ -0.59
CLN3-248ENST00000636355 WNT7BP56706 349 aa11.37□□□□□ -0.59
CLN3-248ENST00000636355 TMEM132DQ14C87 1099 aa11.37□□□□□ -0.59
CLN3-248ENST00000636355 IFI16Q16666 785 aaKnown RBP11.37□□□□□ -0.59
CLN3-248ENST00000636355 GDF6Q6KF10 455 aaPredicted RBP11.37□□□□□ -0.59
CLN3-248ENST00000636355 GJB7Q6PEY0 223 aa11.37□□□□□ -0.59
CLN3-248ENST00000636355 TRAPPC11Q7Z392 1133 aa11.37□□□□□ -0.59
CLN3-248ENST00000636355 ZNF571Q7Z3V5 609 aaPredicted RBP11.37□□□□□ -0.59
CLN3-248ENST00000636355 EFCAB13Q8IY85 973 aa11.37□□□□□ -0.59
CLN3-248ENST00000636355 HACE1Q8IYU2 909 aa11.37□□□□□ -0.59
CLN3-248ENST00000636355 SLC43A3Q8NBI5 491 aa11.37□□□□□ -0.59
CLN3-248ENST00000636355 SNX27Q96L92 541 aa11.37□□□□□ -0.59
CLN3-248ENST00000636355 KREMEN1Q96MU8 473 aa11.37□□□□□ -0.59
CLN3-248ENST00000636355 ALS2CR12Q96Q35 445 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms