RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 SHCBP1LQ9BZQ2 653 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 KCTD10Q9H3F6 313 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 TMEM206Q9H813 350 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 IFT122Q9HBG6 1241 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 ANKFY1Q9P2R3 1169 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 CACNA2D1P54289 1103 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 RIPK1Q13546 671 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 ABCB5Q2M3G0 1257 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 ZNF570Q96NI8 536 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 LXNQ9BS40 222 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 NINJ2Q9NZG7 142 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 AJAP1Q9UKB5 411 aaPredicted RBP11.7□□□□□ -0.54
CLN3-244ENST00000636147 CORO1CQ9ULV4 474 aaPredicted RBP11.7□□□□□ -0.54
CLN3-244ENST00000636147 NRXN3Q9Y4C0 1643 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 RICTORQ6R327 1708 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 TISP43B9A030 160 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 F5H6K3 240 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 H7C0C1 242 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 PAEPP09466 180 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 CNGA1P29973 690 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 ATP5OP48047 213 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 PEX5P50542 639 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 DEUP1Q05D60 604 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 SYDE2Q5VT97 1194 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 INTS5Q6P9B9 1019 aaKnown RBP11.7□□□□□ -0.54
CLN3-244ENST00000636147 CLEC4GQ6UXB4 293 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 PPM1NQ8N819 430 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 DHX38Q92620 1227 aaKnown RBP11.7□□□□□ -0.54
CLN3-244ENST00000636147 RIOX1Q9H6W3 641 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 TRAF3IP3Q9Y228 551 aa11.7□□□□□ -0.54
CLN3-244ENST00000636147 SPECC1L-ADORA2AF8WAN1 911 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 NCF2P19878 526 aaPredicted RBP11.69□□□□□ -0.54
CLN3-244ENST00000636147 BNIP1Q12981 228 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 AP3B2Q13367 1082 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 PKN2Q16513 984 aaKnown RBP11.69□□□□□ -0.54
CLN3-244ENST00000636147 RNF220Q5VTB9 566 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 MIS18BP1Q6P0N0 1132 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 TTC27Q6P3X3 843 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 TMEM270Q6UE05 265 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 ECHDC2Q86YB7 292 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 FAXDC2Q96IV6 333 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 IWS1Q96ST2 819 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 CBWD1Q9BRT8 395 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 NID2Q14112 1375 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 AFDNP55196 1824 aaKnown RBP11.69□□□□□ -0.54
CLN3-244ENST00000636147 COPEO14579 308 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 LIG4P49917 911 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 ALDH18A1P54886 795 aaKnown RBP11.69□□□□□ -0.54
CLN3-244ENST00000636147 ZCWPW2Q504Y3 356 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 RABGAP1LQ5R372 815 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 SCYL2Q6P3W7 929 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 CPNE8Q86YQ8 564 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 SLC25A41Q8N5S1 370 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 SCG3Q8WXD2 468 aaKnown RBP11.69□□□□□ -0.54
CLN3-244ENST00000636147 CCDC17Q96LX7 622 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 TUBB6Q9BUF5 446 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 MRPL47Q9HD33 250 aaKnown RBP11.69□□□□□ -0.54
CLN3-244ENST00000636147 ARMCX1Q9P291 453 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 ALAS1P13196 640 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 ATP2B4P23634 1241 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 RFX6Q8HWS3 928 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 ARHGEF19Q8IW93 802 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 RHOT1Q8IXI2 618 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 RASGEF1CQ8N431 466 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 RBM17Q96I25 401 aaKnown RBP11.69□□□□□ -0.54
CLN3-244ENST00000636147 ETAA1Q9NY74 926 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 CYP39A1Q9NYL5 469 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 TMEM59LQ9UK28 342 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 SLC12A4Q9UP95 1085 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 SMG5Q9UPR3 1016 aaKnown RBP11.69□□□□□ -0.54
CLN3-244ENST00000636147 MYH2Q9UKX2 1941 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 MYH15Q9Y2K3 1946 aa11.69□□□□□ -0.54
CLN3-244ENST00000636147 MSH4O15457 936 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 ECHS1P30084 290 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 DMP1Q13316 513 aaPredicted RBP11.68□□□□□ -0.54
CLN3-244ENST00000636147 KPNB1Q14974 876 aaKnown RBP11.68□□□□□ -0.54
CLN3-244ENST00000636147 MTFR1Q15390 333 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 HIF1AQ16665 826 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 ARSHQ5FYA8 562 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 PPP1R18Q6NYC8 613 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 DNAJC24Q6P3W2 148 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 HAUS6Q7Z4H7 955 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 FAM13CQ8NE31 585 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 ZNF483Q8TF39 744 aaPredicted RBP11.68□□□□□ -0.54
CLN3-244ENST00000636147 VTI1AQ96AJ9 217 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 WDR11Q9BZH6 1224 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 KMT5AQ9NQR1 393 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 RPTORQ8N122 1335 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 TJP3O95049 919 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 KRT19P08727 400 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 DESP17661 470 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 ARL4CP56559 192 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 BLMHQ13867 455 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 PDE1CQ14123 709 aaPredicted RBP11.68□□□□□ -0.54
CLN3-244ENST00000636147 AOC3Q16853 763 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 KRT39Q6A163 491 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 C3orf62Q6ZUJ4 267 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 B4GALNT2Q8NHY0 566 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 MORC4Q8TE76 937 aa11.68□□□□□ -0.54
CLN3-244ENST00000636147 NSL1Q96IY1 281 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms