RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ARHGAP28Q9P2N2 729 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 GABBR1Q9UBS5 961 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 PCDHB2Q9Y5E7 798 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 MROH7Q68CQ1 1323 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 VWA5AO00534 786 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 DGAT1O75907 488 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 CYP1A1P04798 512 aaPredicted RBP13.64□□□□□ -0.23
LINC00540-203ENST00000631321 DLATP10515 647 aaKnown RBP13.64□□□□□ -0.23
LINC00540-203ENST00000631321 KRT5P13647 590 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 KCNA2P16389 499 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 SCP2P22307 547 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 KRT17Q04695 432 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 DGKZQ13574 1117 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 PPP1R7Q15435 360 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 PIGWQ7Z7B1 504 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 KIAA1586Q9HCI6 787 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 XPNPEP1Q9NQW7 623 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 GOLGA6L7A0A1B0GV03 622 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 H0YCG3 227 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 DNM1LO00429 736 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 HNRNPDLO14979 420 aaKnown RBP13.63□□□□□ -0.23
LINC00540-203ENST00000631321 EXTL3O43909 919 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 NR3C2P08235 984 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 SOX10P56693 466 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 BPIFB4P59827 614 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 PSMD6Q15008 389 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 SPRED3Q2MJR0 410 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 TRMT1LQ7Z2T5 733 aaKnown RBP13.63□□□□□ -0.23
LINC00540-203ENST00000631321 NIM1KQ8IY84 436 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 C1orf54Q8WWF1 131 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 ZNF516Q92618 1163 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 DDX27Q96GQ7 796 aaKnown RBP13.63□□□□□ -0.23
LINC00540-203ENST00000631321 RPAP3Q9H6T3 665 aaPredicted RBP13.63□□□□□ -0.23
LINC00540-203ENST00000631321 MYOZ2Q9NPC6 264 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 C1orf112Q9NSG2 853 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 INTS9Q9NV88 658 aaKnown RBP13.63□□□□□ -0.23
LINC00540-203ENST00000631321 CTDP1Q9Y5B0 961 aaPredicted RBP13.63□□□□□ -0.23
LINC00540-203ENST00000631321 NFASCO94856 1347 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 CAV1Q03135 178 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 CENPCQ03188 943 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 CXCL9Q07325 125 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 BAATQ14032 418 aaPredicted RBP13.63□□□□□ -0.23
LINC00540-203ENST00000631321 ITIH4Q14624 930 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 TAOK1Q7L7X3 1001 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 CCDC197Q8NCU1 140 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 GRK7Q8WTQ7 553 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 SERPINB12Q96P63 405 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 JPH2Q9BR39 696 aaPredicted RBP13.63□□□□□ -0.23
LINC00540-203ENST00000631321 FAM213AQ9BRX8 229 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 PI4K2AQ9BTU6 479 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 DCLK3Q9C098 648 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 CDC42EP4Q9H3Q1 356 aaKnown RBP13.63□□□□□ -0.23
LINC00540-203ENST00000631321 STYXL1Q9Y6J8 313 aa13.63□□□□□ -0.23
LINC00540-203ENST00000631321 SMIM23A6NLE4 172 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 PSAPP07602 524 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 RRM1P23921 792 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 CNGA2Q16280 664 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 ZACNQ401N2 412 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 MON1BQ7L1V2 547 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 SNF8Q96H20 258 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 CCDC114Q96M63 670 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 TRIM7Q9C029 511 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 SLC40A1Q9NP59 571 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 CHST7Q9NS84 486 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 RNF146Q9NTX7 359 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 NEU2Q9Y3R4 380 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 TCEA3O75764 348 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 PROSCO94903 275 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 C4BPAP04003 597 aaKnown RBP13.62□□□□□ -0.23
LINC00540-203ENST00000631321 KCNA3P22001 575 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 SCTRP47872 440 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 MTMR2Q13614 643 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 REPS2Q8NFH8 660 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 UHMK1Q8TAS1 419 aaKnown RBP13.62□□□□□ -0.23
LINC00540-203ENST00000631321 ELMO3Q96BJ8 720 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 HERPUD2Q9BSE4 406 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 ATP6V0A4Q9HBG4 840 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 CYP26B1Q9NR63 512 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 HOMER3Q9NSC5 361 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 KCNG1Q9UIX4 513 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.62□□□□□ -0.23
LINC00540-203ENST00000631321 RIPK3Q9Y572 518 aa13.62□□□□□ -0.23
LINC00540-203ENST00000631321 CCT8L1PA6NM43 557 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 PSTPIP1O43586 416 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 SORBS3O60504 671 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 RGS20O76081 388 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 CALCAP01258 141 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 ACO1P21399 889 aaKnown RBP13.61□□□□□ -0.23
LINC00540-203ENST00000631321 SLCO1A2P46721 670 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 GTF2A1P52655 376 aaPredicted RBP13.61□□□□□ -0.23
LINC00540-203ENST00000631321 KLF1Q13351 362 aaPredicted RBP13.61□□□□□ -0.23
LINC00540-203ENST00000631321 TNFAIP1Q13829 316 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 TRIM72Q6ZMU5 477 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 EXOC3L1Q86VI1 746 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 LRRC34Q8IZ02 419 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 ATL2Q8NHH9 583 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 ATG4CQ96DT6 458 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 IFT74Q96LB3 600 aa13.61□□□□□ -0.23
LINC00540-203ENST00000631321 DDX23Q9BUQ8 820 aaKnown RBP13.61□□□□□ -0.23
LINC00540-203ENST00000631321 ASIC3Q9UHC3 531 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms