RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	ALDH1A3	P47895	512 aa		4.01	□□□□□ -1.77
CNOT1-223	ENST00000628857	FXR1	P51114	621 aa	Known RBP eCLIP	4.01	□□□□□ -1.77	7e-8	■■□□□ 13.8
CNOT1-223	ENST00000628857	THEMIS2	Q5TEJ8	643 aa		4.01	□□□□□ -1.77
CNOT1-223	ENST00000628857	MRGPRE	Q86SM8	312 aa		4.01	□□□□□ -1.77
CNOT1-223	ENST00000628857	ZBTB46	Q86UZ6	589 aa		4.01	□□□□□ -1.77
CNOT1-223	ENST00000628857	RHOT1	Q8IXI2	618 aa		4.01	□□□□□ -1.77
CNOT1-223	ENST00000628857	SYNE4	Q8N205	404 aa		4.01	□□□□□ -1.77
CNOT1-223	ENST00000628857	FAM43A	Q8N2R8	423 aa		4.01	□□□□□ -1.77
CNOT1-223	ENST00000628857	CPT1C	Q8TCG5	803 aa		4.01	□□□□□ -1.77
CNOT1-223	ENST00000628857	CCHCR1	Q8TD31	782 aa		4.01	□□□□□ -1.77
CNOT1-223	ENST00000628857	NSUN6	Q8TEA1	469 aa	Known RBP	4.01	□□□□□ -1.77
CNOT1-223	ENST00000628857	DPF2	Q92785	391 aa		4.01	□□□□□ -1.77
CNOT1-223	ENST00000628857	FAM193B	Q96PV7	902 aa	Predicted RBP	4.01	□□□□□ -1.77
CNOT1-223	ENST00000628857	PUS7	Q96PZ0	661 aa	Known RBP	4.01	□□□□□ -1.77
CNOT1-223	ENST00000628857	SIDT1	Q9NXL6	827 aa	Known RBP	4.01	□□□□□ -1.77
CNOT1-223	ENST00000628857	GPRC5B	Q9NZH0	403 aa		4.01	□□□□□ -1.77
CNOT1-223	ENST00000628857	SLC23A1	Q9UHI7	598 aa		4.01	□□□□□ -1.77
CNOT1-223	ENST00000628857	EIF2B4	Q9UI10	523 aa	Known RBP	4.01	□□□□□ -1.77
CNOT1-223	ENST00000628857	POLH	Q9Y253	713 aa		4.01	□□□□□ -1.77
CNOT1-223	ENST00000628857	ANKRD6	Q9Y2G4	727 aa		4.01	□□□□□ -1.77
CNOT1-223	ENST00000628857	HS3ST4	Q9Y661	456 aa		4.01	□□□□□ -1.77
CNOT1-223	ENST00000628857	CCDC154	A6NI56	674 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	MARCH11	A6NNE9	402 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	LEFTY2	O00292	366 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	ALDH1L1	O75891	902 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	ABLIM3	O94929	683 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	ZRANB2	O95218	330 aa	Known RBP eCLIP	4	□□□□□ -1.77
CNOT1-223	ENST00000628857	POU2F2	P09086	479 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	FTH1P19	P0C7X4	201 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	RAP2A	P10114	183 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	MTHFD1	P11586	935 aa	Known RBP	4	□□□□□ -1.77
CNOT1-223	ENST00000628857	PCSK1	P29120	753 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	APOBEC3A	P31941	199 aa	Predicted RBP	4	□□□□□ -1.77
CNOT1-223	ENST00000628857	EPHB1	P54762	984 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	BLOC1S1	P78537	153 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	MXRA7	P84157	204 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	DGCR2	P98153	550 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	KIF23	Q02241	960 aa	Predicted RBP	4	□□□□□ -1.77
CNOT1-223	ENST00000628857	PABPC1L	Q4VXU2	614 aa	Known RBP	4	□□□□□ -1.77
CNOT1-223	ENST00000628857	LRRC55	Q6ZSA7	311 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	ARHGEF19	Q8IW93	802 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	IFI44	Q8TCB0	444 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	NUP133	Q8WUM0	1156 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	PGBD4	Q96DM1	585 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	BOD1	Q96IK1	185 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	MED15	Q96RN5	788 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	DMRTA2	Q96SC8	542 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	POLR3GL	Q9BT43	218 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	C11orf54	Q9H0W9	315 aa	Predicted RBP	4	□□□□□ -1.77
CNOT1-223	ENST00000628857	TMPRSS5	Q9H3S3	457 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	TMEM74B	Q9NUR3	256 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	SRRD	Q9UH36	339 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	PNMA8B	Q9ULN7	279 aa	Predicted RBP	4	□□□□□ -1.77
CNOT1-223	ENST00000628857	ATP11B	Q9Y2G3	1177 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	PCDHB1	Q9Y5F3	818 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	ACTL7A	Q9Y615	435 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	FPGT-TNNI3K	V9GXZ4	949 aa		4	□□□□□ -1.77
CNOT1-223	ENST00000628857	WNT10B	O00744	389 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	DTNB	O60941	627 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	RFPL1	O75677	317 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	ANXA1	P04083	346 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	CFI	P05156	583 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	ADH4	P08319	380 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	U2AF1L5	P0DN76	240 aa	Predicted RBP	3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	CKB	P12277	381 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	PDC	P20941	246 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	FPR1	P21462	350 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	NR4A1	P22736	598 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	CYP2C19	P33261	490 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	CHN2	P52757	468 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	U2AF1	Q01081	240 aa	Known RBP eCLIP	3.99	□□□□□ -1.77	1e-6	■■■■□ 20.1
CNOT1-223	ENST00000628857	DSC2	Q02487	901 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	CREM	Q03060	361 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	TLE1	Q04724	770 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	DPT	Q07507	201 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	MCL1	Q07820	350 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	TARDBP	Q13148	414 aa	Known RBP eCLIP	3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	BEAN1	Q3B7T3	259 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	LY6G5C	Q5SRR4	150 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	USP45	Q70EL2	814 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	RSPH3	Q86UC2	560 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	ZFPM1	Q8IX07	1006 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	ZGPAT	Q8N5A5	531 aa	Known RBP	3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	FITM2	Q8N6M3	262 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	SLC16A11	Q8NCK7	471 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	STON2	Q8WXE9	905 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	HSPBAP1	Q96EW2	488 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	FAM167A	Q96KS9	214 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	SORCS2	Q96PQ0	1159 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	KRTAP4-2	Q9BYR5	136 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	PCED1A	Q9H1Q7	454 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	RNPEP	Q9H4A4	650 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	AKIP1	Q9NQ31	210 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	KLHL11	Q9NVR0	708 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	TRPM5	Q9NZQ8	1165 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	PCDHA13	Q9Y5I0	950 aa		3.99	□□□□□ -1.77
CNOT1-223	ENST00000628857	MYADML2	A6NDP7	307 aa		3.98	□□□□□ -1.77
CNOT1-223	ENST00000628857	TMEM191C	A6NGB0	347 aa		3.98	□□□□□ -1.77
CNOT1-223	ENST00000628857	AKAP8	O43823	692 aa	Known RBP	3.98	□□□□□ -1.77
CNOT1-223	ENST00000628857	FAM20B	O75063	409 aa		3.98	□□□□□ -1.77

Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms