RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 ZFP42Q96MM3 310 aa16.01■□□□□ 0.15
PNKP-221ENST00000627317 NECAB3Q96P71 396 aaPredicted RBP16.01■□□□□ 0.15
PNKP-221ENST00000627317 TSG101Q99816 390 aa16.01■□□□□ 0.15
PNKP-221ENST00000627317 FAM213AQ9BRX8 229 aa16.01■□□□□ 0.15
PNKP-221ENST00000627317 RPF1Q9H9Y2 349 aaKnown RBP16.01■□□□□ 0.15
PNKP-221ENST00000627317 HSPBP1Q9NZL4 362 aa16.01■□□□□ 0.15
PNKP-221ENST00000627317 TMEM63CQ9P1W3 806 aa16.01■□□□□ 0.15
PNKP-221ENST00000627317 NCK2O43639 380 aa16■□□□□ 0.15
PNKP-221ENST00000627317 FAM189A1O60320 539 aa16■□□□□ 0.15
PNKP-221ENST00000627317 TBX10O75333 385 aa16■□□□□ 0.15
PNKP-221ENST00000627317 CSPG5O95196 566 aa16■□□□□ 0.15
PNKP-221ENST00000627317 LDHAP00338 332 aaKnown RBP16■□□□□ 0.15
PNKP-221ENST00000627317 CXCL8P10145 99 aa16■□□□□ 0.15
PNKP-221ENST00000627317 BMP6P22004 513 aa16■□□□□ 0.15
PNKP-221ENST00000627317 TNFSF9P41273 254 aa16■□□□□ 0.15
PNKP-221ENST00000627317 ACOT2P49753 483 aa16■□□□□ 0.15
PNKP-221ENST00000627317 SCNN1GP51170 649 aa16■□□□□ 0.15
PNKP-221ENST00000627317 ERVFC1P60507 584 aa16■□□□□ 0.15
PNKP-221ENST00000627317 RNASELQ05823 741 aaKnown RBP16■□□□□ 0.15
PNKP-221ENST00000627317 DLX2Q07687 328 aaPredicted RBP16■□□□□ 0.15
PNKP-221ENST00000627317 ZBTB41Q5SVQ8 909 aa16■□□□□ 0.15
PNKP-221ENST00000627317 KLHL10Q6JEL2 608 aa16■□□□□ 0.15
PNKP-221ENST00000627317 RBM43Q6ZSC3 357 aaKnown RBP16■□□□□ 0.15
PNKP-221ENST00000627317 C12orf56Q8IXR9 622 aa16■□□□□ 0.15
PNKP-221ENST00000627317 GPD1LQ8N335 351 aa16■□□□□ 0.15
PNKP-221ENST00000627317 BCL7CQ8WUZ0 217 aaPredicted RBP16■□□□□ 0.15
PNKP-221ENST00000627317 SNX27Q96L92 541 aa16■□□□□ 0.15
PNKP-221ENST00000627317 UHRF1Q96T88 793 aaPredicted RBP16■□□□□ 0.15
PNKP-221ENST00000627317 TLR9Q9NR96 1032 aa16■□□□□ 0.15
PNKP-221ENST00000627317 SPG21Q9NZD8 308 aa16■□□□□ 0.15
PNKP-221ENST00000627317 KANSL3Q9P2N6 904 aa16■□□□□ 0.15
PNKP-221ENST00000627317 CTNND2Q9UQB3 1225 aa16■□□□□ 0.15
PNKP-221ENST00000627317 NCOR1O75376 2440 aa16■□□□□ 0.15
PNKP-221ENST00000627317 CITO14578 2027 aa15.99■□□□□ 0.15
PNKP-221ENST00000627317 GOLGA8IPA6NC78 632 aa15.99■□□□□ 0.15
PNKP-221ENST00000627317 GOLGA8JA6NMD2 632 aa15.99■□□□□ 0.15
PNKP-221ENST00000627317 TULP1O00294 542 aaPredicted RBP15.99■□□□□ 0.15
PNKP-221ENST00000627317 LINC01565O15544 149 aa15.99■□□□□ 0.15
PNKP-221ENST00000627317 EXTL3O43909 919 aa15.99■□□□□ 0.15
PNKP-221ENST00000627317 GLP2RO95838 553 aa15.99■□□□□ 0.15
PNKP-221ENST00000627317 POMCP01189 267 aa15.99■□□□□ 0.15
PNKP-221ENST00000627317 NR3C1P04150 777 aa15.99■□□□□ 0.15
PNKP-221ENST00000627317 BCAR1P56945 870 aa15.99■□□□□ 0.15
PNKP-221ENST00000627317 NLRP12P59046 1061 aa15.99■□□□□ 0.15
PNKP-221ENST00000627317 PPP2R3AQ06190 1150 aa15.99■□□□□ 0.15
PNKP-221ENST00000627317 ENOX2Q16206 610 aaKnown RBP15.99■□□□□ 0.15
PNKP-221ENST00000627317 SASS6Q6UVJ0 657 aa15.99■□□□□ 0.15
PNKP-221ENST00000627317 EFHBQ8N7U6 833 aa15.99■□□□□ 0.15
PNKP-221ENST00000627317 XXYLT1Q8NBI6 393 aa15.99■□□□□ 0.15
PNKP-221ENST00000627317 VN1R2Q8NFZ6 395 aa15.99■□□□□ 0.15
PNKP-221ENST00000627317 FAM212AQ96EL1 285 aa15.99■□□□□ 0.15
PNKP-221ENST00000627317 DHTKD1Q96HY7 919 aaPredicted RBP15.99■□□□□ 0.15
PNKP-221ENST00000627317 NRDE2Q9H7Z3 1164 aa15.99■□□□□ 0.15
PNKP-221ENST00000627317 KIAA1586Q9HCI6 787 aa15.99■□□□□ 0.15
PNKP-221ENST00000627317 DACH1Q9UI36 760 aa15.99■□□□□ 0.15
PNKP-221ENST00000627317 CPSF3Q9UKF6 684 aaKnown RBP15.99■□□□□ 0.15
PNKP-221ENST00000627317 TRAF3IP3Q9Y228 551 aa15.99■□□□□ 0.15
PNKP-221ENST00000627317 H3BQ06 376 aaPredicted RBP15.98■□□□□ 0.15
PNKP-221ENST00000627317 EXOC3O60645 756 aa15.98■□□□□ 0.15
PNKP-221ENST00000627317 CD44P16070 742 aaKnown RBP15.98■□□□□ 0.15
PNKP-221ENST00000627317 CCNE1P24864 410 aa15.98■□□□□ 0.15
PNKP-221ENST00000627317 LRRC63Q05C16 580 aa15.98■□□□□ 0.15
PNKP-221ENST00000627317 GRIK3Q13003 919 aa15.98■□□□□ 0.15
PNKP-221ENST00000627317 PAK1Q13153 545 aa15.98■□□□□ 0.15
PNKP-221ENST00000627317 ADAM15Q13444 863 aa15.98■□□□□ 0.15
PNKP-221ENST00000627317 KCNC3Q14003 757 aa15.98■□□□□ 0.15
PNKP-221ENST00000627317 EDRF1Q3B7T1 1238 aa15.98■□□□□ 0.15
PNKP-221ENST00000627317 CENPPQ6IPU0 288 aa15.98■□□□□ 0.15
PNKP-221ENST00000627317 PDE12Q6L8Q7 609 aaKnown RBP15.98■□□□□ 0.15
PNKP-221ENST00000627317 ZNF280BQ86YH2 543 aa15.98■□□□□ 0.15
PNKP-221ENST00000627317 MLKLQ8NB16 471 aa15.98■□□□□ 0.15
PNKP-221ENST00000627317 NELFBQ8WX92 580 aa15.98■□□□□ 0.15
PNKP-221ENST00000627317 MSLNLQ96KJ4 702 aa15.98■□□□□ 0.15
PNKP-221ENST00000627317 FAM193BQ96PV7 902 aaPredicted RBP15.98■□□□□ 0.15
PNKP-221ENST00000627317 VN1R3Q9BXE9 311 aa15.98■□□□□ 0.15
PNKP-221ENST00000627317 PLEKHA5Q9HAU0 1116 aa15.98■□□□□ 0.15
PNKP-221ENST00000627317 CLDND1Q9NY35 253 aa15.98■□□□□ 0.15
PNKP-221ENST00000627317 RBAKQ9NYW8 714 aaPredicted RBP15.98■□□□□ 0.15
PNKP-221ENST00000627317 CLEC1BQ9P126 229 aa15.98■□□□□ 0.15
PNKP-221ENST00000627317 DNAJB4Q9UDY4 337 aa15.98■□□□□ 0.15
PNKP-221ENST00000627317 BICDL2A1A5D9 508 aa15.97■□□□□ 0.15
PNKP-221ENST00000627317 GRXCR2A6NFK2 248 aa15.97■□□□□ 0.15
PNKP-221ENST00000627317 ZNF233A6NK53 670 aa15.97■□□□□ 0.15
PNKP-221ENST00000627317 PPP1R3GB7ZBB8 358 aa15.97■□□□□ 0.15
PNKP-221ENST00000627317 PTGESO14684 152 aa15.97■□□□□ 0.15
PNKP-221ENST00000627317 ZC3H11AO75152 810 aaKnown RBP eCLIP15.97■□□□□ 0.15
PNKP-221ENST00000627317 DDHD2O94830 711 aa15.97■□□□□ 0.15
PNKP-221ENST00000627317 THP07101 528 aa15.97■□□□□ 0.15
PNKP-221ENST00000627317 GALTP07902 379 aa15.97■□□□□ 0.15
PNKP-221ENST00000627317 NR2F2P24468 414 aa15.97■□□□□ 0.15
PNKP-221ENST00000627317 RPL13P26373 211 aaKnown RBP15.97■□□□□ 0.15
PNKP-221ENST00000627317 NRIP1P48552 1158 aa15.97■□□□□ 0.15
PNKP-221ENST00000627317 SLC11A1P49279 550 aa15.97■□□□□ 0.15
PNKP-221ENST00000627317 POU5F1Q01860 360 aaKnown RBP15.97■□□□□ 0.15
PNKP-221ENST00000627317 DSC1Q08554 894 aa15.97■□□□□ 0.15
PNKP-221ENST00000627317 MYBPC2Q14324 1141 aa15.97■□□□□ 0.15
PNKP-221ENST00000627317 NFIL3Q16649 462 aa15.97■□□□□ 0.15
PNKP-221ENST00000627317 SLC10A6Q3KNW5 377 aa15.97■□□□□ 0.15
PNKP-221ENST00000627317 DPCR1Q3MIW9 517 aa15.97■□□□□ 0.15
PNKP-221ENST00000627317 ZCWPW2Q504Y3 356 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms