RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 KREMEN1Q96MU8 473 aa15.41■□□□□ 0.06
USP39-220ENST00000613444 SPAG5Q96R06 1193 aa15.41■□□□□ 0.06
USP39-220ENST00000613444 PI4K2AQ9BTU6 479 aa15.41■□□□□ 0.06
USP39-220ENST00000613444 ASB7Q9H672 318 aa15.41■□□□□ 0.06
USP39-220ENST00000613444 AGO3Q9H9G7 860 aaKnown RBP15.41■□□□□ 0.06
USP39-220ENST00000613444 NHEJ1Q9H9Q4 299 aaPredicted RBP15.41■□□□□ 0.06
USP39-220ENST00000613444 ST3GAL5Q9UNP4 418 aa15.41■□□□□ 0.06
USP39-220ENST00000613444 ZC3H11AO75152 810 aaKnown RBP eCLIP15.4■□□□□ 0.06
USP39-220ENST00000613444 NFICP08651 508 aa15.4■□□□□ 0.06
USP39-220ENST00000613444 PNMA6AP0CW24 399 aaPredicted RBP15.4■□□□□ 0.06
USP39-220ENST00000613444 DUOXA2Q1HG44 320 aa15.4■□□□□ 0.06
USP39-220ENST00000613444 ASTE1Q2TB18 679 aaPredicted RBP15.4■□□□□ 0.06
USP39-220ENST00000613444 FBXO47Q5MNV8 452 aa15.4■□□□□ 0.06
USP39-220ENST00000613444 TRAPPC11Q7Z392 1133 aa15.4■□□□□ 0.06
USP39-220ENST00000613444 TATDN2Q93075 761 aa15.4■□□□□ 0.06
USP39-220ENST00000613444 ZNF333Q96JL9 665 aa15.4■□□□□ 0.06
USP39-220ENST00000613444 ACAP3Q96P50 834 aa15.4■□□□□ 0.06
USP39-220ENST00000613444 DESI2Q9BSY9 194 aa15.4■□□□□ 0.06
USP39-220ENST00000613444 CRISPLD2Q9H0B8 497 aa15.4■□□□□ 0.06
USP39-220ENST00000613444 CXCL16Q9H2A7 254 aa15.4■□□□□ 0.06
USP39-220ENST00000613444 UBE2TQ9NPD8 197 aaPredicted RBP15.4■□□□□ 0.06
USP39-220ENST00000613444 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.4■□□□□ 0.069e-9■■■■■ 111.8
USP39-220ENST00000613444 HES2Q9Y543 173 aa15.4■□□□□ 0.06
USP39-220ENST00000613444 ADGRG1Q9Y653 693 aa15.4■□□□□ 0.06
USP39-220ENST00000613444 CAND2O75155 1236 aa15.39■□□□□ 0.05
USP39-220ENST00000613444 RPS6KA5O75582 802 aa15.39■□□□□ 0.05
USP39-220ENST00000613444 CST3P01034 146 aaPredicted RBP15.39■□□□□ 0.05
USP39-220ENST00000613444 MAPK8IP2Q13387 824 aaPredicted RBP15.39■□□□□ 0.05
USP39-220ENST00000613444 BIRC3Q13489 604 aa15.39■□□□□ 0.05
USP39-220ENST00000613444 ZNF618Q5T7W0 954 aa15.39■□□□□ 0.05
USP39-220ENST00000613444 FBXO46Q6PJ61 603 aaPredicted RBP15.39■□□□□ 0.05
USP39-220ENST00000613444 CXorf38Q8TB03 319 aa15.39■□□□□ 0.05
USP39-220ENST00000613444 NXF3Q9H4D5 531 aaKnown RBP15.39■□□□□ 0.05
USP39-220ENST00000613444 SNTG2Q9NY99 539 aa15.39■□□□□ 0.05
USP39-220ENST00000613444 NOD1Q9Y239 953 aa15.39■□□□□ 0.05
USP39-220ENST00000613444 REXO2Q9Y3B8 237 aaKnown RBP15.39■□□□□ 0.05
USP39-220ENST00000613444 EPN1Q9Y6I3 576 aaPredicted RBP15.39■□□□□ 0.05
USP39-220ENST00000613444 NDUFA10O95299 355 aa15.39■□□□□ 0.05
USP39-220ENST00000613444 SERPING1P05155 500 aa15.39■□□□□ 0.05
USP39-220ENST00000613444 PRKCIP41743 596 aa15.39■□□□□ 0.05
USP39-220ENST00000613444 NCOA4Q13772 614 aa15.39■□□□□ 0.05
USP39-220ENST00000613444 JADE1Q6IE81 842 aa15.39■□□□□ 0.05
USP39-220ENST00000613444 ALKAL1Q6UXT8 129 aa15.39■□□□□ 0.05
USP39-220ENST00000613444 APBB1IPQ7Z5R6 666 aaPredicted RBP15.39■□□□□ 0.05
USP39-220ENST00000613444 REXO1L1PQ8IX06 675 aa15.39■□□□□ 0.05
USP39-220ENST00000613444 CCDC170Q8IYT3 715 aa15.39■□□□□ 0.05
USP39-220ENST00000613444 NT5C1BQ96P26 610 aa15.39■□□□□ 0.05
USP39-220ENST00000613444 APOBEC3GQ9HC16 384 aaKnown RBP15.39■□□□□ 0.05
USP39-220ENST00000613444 ERVK-5Q9HDB9 667 aa15.39■□□□□ 0.05
USP39-220ENST00000613444 TRMT1Q9NXH9 659 aaKnown RBP15.39■□□□□ 0.05
USP39-220ENST00000613444 PPP2R2CQ9Y2T4 447 aa15.39■□□□□ 0.05
USP39-220ENST00000613444 SSU72P8A0A1W2PR75 194 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 FOXN3O00409 490 aaPredicted RBP15.38■□□□□ 0.05
USP39-220ENST00000613444 CKBP12277 381 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 SOX5P35711 763 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 PIK3CAP42336 1068 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 TFAMQ00059 246 aaKnown RBP15.38■□□□□ 0.05
USP39-220ENST00000613444 LPIN1Q14693 890 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 FAM126BQ8IXS8 530 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 TMEM130Q8N3G9 435 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 SMG8Q8ND04 991 aaKnown RBP15.38■□□□□ 0.05
USP39-220ENST00000613444 ARMC5Q96C12 935 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 PPP1R13BQ96KQ4 1090 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 CCDC94Q9BW85 323 aaPredicted RBP15.38■□□□□ 0.05
USP39-220ENST00000613444 SEZ6LQ9BYH1 1024 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 MKI67P46013 3256 aaKnown RBP15.38■□□□□ 0.05
USP39-220ENST00000613444 ZNF263O14978 683 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 CD4P01730 458 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 EIF4A3P38919 411 aaKnown RBP15.38■□□□□ 0.05
USP39-220ENST00000613444 STAT1P42224 750 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 LBX1P52954 281 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 GCNT1Q02742 428 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 ARID5AQ03989 594 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 ASIC2Q16515 512 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 ARHGAP44Q17R89 818 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 SPOPLQ6IQ16 392 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 PPM1KQ8N3J5 372 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 C1orf127Q8N9H9 656 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 ACRBPQ8NEB7 543 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 OLIG1Q8TAK6 271 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 SNX27Q96L92 541 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 PLEKHA5Q9HAU0 1116 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 CHST12Q9NRB3 414 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 SIX4Q9UIU6 781 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 PADI3Q9ULW8 664 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 C2CD2Q9Y426 696 aa15.38■□□□□ 0.05
USP39-220ENST00000613444 SCN1AP35498 2009 aa15.37■□□□□ 0.05
USP39-220ENST00000613444 KIAA0100Q14667 2235 aaKnown RBP15.37■□□□□ 0.05
USP39-220ENST00000613444 EVI5O60447 810 aa15.37■□□□□ 0.05
USP39-220ENST00000613444 ASS1P00966 412 aaKnown RBP15.37■□□□□ 0.05
USP39-220ENST00000613444 TMEM191BP0C7N4 346 aa15.37■□□□□ 0.05
USP39-220ENST00000613444 GHRP10912 638 aa15.37■□□□□ 0.05
USP39-220ENST00000613444 NFX1Q12986 1120 aaKnown RBP15.37■□□□□ 0.05
USP39-220ENST00000613444 MBTPS1Q14703 1052 aa15.37■□□□□ 0.05
USP39-220ENST00000613444 CD302Q8IX05 232 aa15.37■□□□□ 0.05
USP39-220ENST00000613444 SHC3Q92529 594 aa15.37■□□□□ 0.05
USP39-220ENST00000613444 ZMAT2Q96NC0 199 aaKnown RBP15.37■□□□□ 0.05
USP39-220ENST00000613444 TRIM6Q9C030 488 aaPredicted RBP15.37■□□□□ 0.05
USP39-220ENST00000613444 XYLT2Q9H1B5 865 aa15.37■□□□□ 0.05
USP39-220ENST00000613444 RNF39Q9H2S5 420 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms