RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 NSUN7Q8NE18 718 aaKnown RBP10.53□□□□□ -0.72
VRK3-224ENST00000601849 ZNF461Q8TAF7 563 aa10.53□□□□□ -0.72
VRK3-224ENST00000601849 C8orf76Q96K31 380 aa10.53□□□□□ -0.72
VRK3-224ENST00000601849 MTRRQ9UBK8 725 aa10.53□□□□□ -0.72
VRK3-224ENST00000601849 LRWD1Q9UFC0 647 aa10.53□□□□□ -0.72
VRK3-224ENST00000601849 DNM3Q9UQ16 869 aa10.53□□□□□ -0.72
VRK3-224ENST00000601849 RBM19Q9Y4C8 960 aaKnown RBP10.53□□□□□ -0.72
VRK3-224ENST00000601849 CDY1Q9Y6F8 540 aa10.53□□□□□ -0.72
VRK3-224ENST00000601849 C2orf16Q68DN1 1984 aa10.53□□□□□ -0.72
VRK3-224ENST00000601849 MTCL1Q9Y4B5 1905 aaKnown RBP10.52□□□□□ -0.72
VRK3-224ENST00000601849 FRYLO94915 3013 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 MAN2B1O00754 1011 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 SPTLC1O15269 473 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 ECI2O75521 394 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 CCT6AP40227 531 aaKnown RBP10.52□□□□□ -0.73
VRK3-224ENST00000601849 CLCNKBP51801 687 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 FOSBP53539 338 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 NTHL1P78549 312 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 PDIA5Q14554 519 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 ZNF174Q15697 407 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 UPP1Q16831 310 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 CYP4A22Q5TCH4 519 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 IQCEQ6IPM2 695 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 POTEGQ6S5H5 508 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 ITFG1Q8TB96 612 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 MCRS1Q96EZ8 462 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 FOXQ1Q9C009 403 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 TMEM60Q9H2L4 133 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 BHMT2Q9H2M3 363 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 FOXP1Q9H334 677 aaPredicted RBP10.52□□□□□ -0.73
VRK3-224ENST00000601849 DLGAP2Q9P1A6 1054 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 NCDNQ9UBB6 729 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 CACNG4Q9UBN1 327 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 NUB1Q9Y5A7 615 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 PCDHGA2Q9Y5H1 932 aa10.52□□□□□ -0.73
VRK3-224ENST00000601849 SMIM28A0A1B0GU29 152 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 DTNBO60941 627 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 MARCKSP29966 332 aaPredicted RBP10.51□□□□□ -0.73
VRK3-224ENST00000601849 RPL9P32969 192 aaKnown RBP10.51□□□□□ -0.73
VRK3-224ENST00000601849 GRM5P41594 1212 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 TRAPPC10P48553 1259 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 NRLP54845 237 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 CSTF1Q05048 431 aaKnown RBP10.51□□□□□ -0.73
VRK3-224ENST00000601849 STRN3Q13033 797 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 DMP1Q13316 513 aaPredicted RBP10.51□□□□□ -0.73
VRK3-224ENST00000601849 NAB2Q15742 525 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 VARS2Q5ST30 1063 aaKnown RBP10.51□□□□□ -0.73
VRK3-224ENST00000601849 KRT79Q5XKE5 535 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 PDZD4Q76G19 769 aaPredicted RBP10.51□□□□□ -0.73
VRK3-224ENST00000601849 ST13P5Q8NFI4 369 aaPredicted RBP10.51□□□□□ -0.73
VRK3-224ENST00000601849 IRF7Q92985 503 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 ELSPBP1Q96BH3 223 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 DRC1Q96MC2 740 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 ZNF512Q96ME7 567 aaPredicted RBP10.51□□□□□ -0.73
VRK3-224ENST00000601849 ACAP3Q96P50 834 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 KXD1Q9BQD3 176 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 LLPHQ9BRT6 129 aaKnown RBP10.51□□□□□ -0.73
VRK3-224ENST00000601849 RPP25Q9BUL9 199 aaKnown RBP10.51□□□□□ -0.73
VRK3-224ENST00000601849 MRPL4Q9BYD3 311 aaKnown RBP10.51□□□□□ -0.73
VRK3-224ENST00000601849 FAM126AQ9BYI3 521 aaPredicted RBP10.51□□□□□ -0.73
VRK3-224ENST00000601849 CCDC113Q9H0I3 377 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 TMEM134Q9H6X4 195 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 C17orf75Q9HAS0 396 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 CYP4F11Q9HBI6 524 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 ZFP14Q9HCL3 533 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 AVENQ9NQS1 362 aaPredicted RBP10.51□□□□□ -0.73
VRK3-224ENST00000601849 DNMT3BQ9UBC3 853 aaKnown RBP10.51□□□□□ -0.73
VRK3-224ENST00000601849 MAFFQ9ULX9 164 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 LIMCH1Q9UPQ0 1083 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 KIAA1024Q9UPX6 916 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 TNFSF13BQ9Y275 285 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.51□□□□□ -0.73
VRK3-224ENST00000601849 ARID2Q68CP9 1835 aa10.51□□□□□ -0.73
VRK3-224ENST00000601849 RIF1Q5UIP0 2472 aaKnown RBP10.5□□□□□ -0.73
VRK3-224ENST00000601849 DNAH14Q0VDD8 3507 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 TTLL13PA6NNM8 815 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 SYN3O14994 580 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 JAK2O60674 1132 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 MICAL2O94851 1124 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 RHOP08100 348 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 ATF2P15336 505 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 RPS9P46781 194 aaKnown RBP10.5□□□□□ -0.73
VRK3-224ENST00000601849 FXR2P51116 673 aaKnown RBP eCLIP10.5□□□□□ -0.73
VRK3-224ENST00000601849 SMTNP53814 917 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 ARPP19P56211 112 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 PEX3P56589 373 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 HMGN5P82970 282 aaKnown RBP10.5□□□□□ -0.73
VRK3-224ENST00000601849 GUCY1B3Q02153 619 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 ADCY1Q08828 1119 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 ZNF568Q3ZCX4 644 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 GLRA4Q5JXX5 417 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 TTC38Q5R3I4 469 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 TPGS2Q68CL5 300 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 SLC8B1Q6J4K2 584 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 NPAS3Q8IXF0 933 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 LEMD2Q8NC56 503 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 APPL2Q8NEU8 664 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 DNASE1L2Q92874 299 aa10.5□□□□□ -0.73
VRK3-224ENST00000601849 PPP1R10Q96QC0 940 aaKnown RBP10.5□□□□□ -0.73
VRK3-224ENST00000601849 CORO1BQ9BR76 489 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms