RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 CROCCP2Q86T23 111 aa19.55■□□□□ 0.72
UPF1-210ENST00000600689 PRMT6Q96LA8 375 aaPredicted RBP19.55■□□□□ 0.72
UPF1-210ENST00000600689 CCDC17Q96LX7 622 aa19.55■□□□□ 0.72
UPF1-210ENST00000600689 LRRC37BQ96QE4 947 aa19.55■□□□□ 0.72
UPF1-210ENST00000600689 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.55■□□□□ 0.72
UPF1-210ENST00000600689 ICA1Q05084 483 aa19.55■□□□□ 0.72
UPF1-210ENST00000600689 OVGP1Q12889 678 aa19.55■□□□□ 0.72
UPF1-210ENST00000600689 BLMHQ13867 455 aa19.55■□□□□ 0.72
UPF1-210ENST00000600689 CDCA2Q69YH5 1023 aaPredicted RBP19.55■□□□□ 0.72
UPF1-210ENST00000600689 ZNF720Q7Z2F6 126 aa19.55■□□□□ 0.72
UPF1-210ENST00000600689 FAM13CQ8NE31 585 aa19.55■□□□□ 0.72
UPF1-210ENST00000600689 SLITRK3O94933 977 aa19.54■□□□□ 0.72
UPF1-210ENST00000600689 KRT5P13647 590 aa19.54■□□□□ 0.72
UPF1-210ENST00000600689 HSPA6P17066 643 aa19.54■□□□□ 0.72
UPF1-210ENST00000600689 KAZNQ674X7 775 aa19.54■□□□□ 0.72
UPF1-210ENST00000600689 ROPN1BQ9BZX4 212 aaPredicted RBP19.54■□□□□ 0.72
UPF1-210ENST00000600689 ROPN1Q9HAT0 212 aaPredicted RBP19.54■□□□□ 0.72
UPF1-210ENST00000600689 PHTF1Q9UMS5 762 aa19.54■□□□□ 0.72
UPF1-210ENST00000600689 CHKBQ9Y259 395 aa19.54■□□□□ 0.72
UPF1-210ENST00000600689 ATP4AP20648 1035 aa19.54■□□□□ 0.72
UPF1-210ENST00000600689 RRM1P23921 792 aa19.54■□□□□ 0.72
UPF1-210ENST00000600689 KIF22Q14807 665 aa19.54■□□□□ 0.72
UPF1-210ENST00000600689 IDI2Q9BXS1 227 aa19.54■□□□□ 0.72
UPF1-210ENST00000600689 PDGFDQ9GZP0 370 aaPredicted RBP19.54■□□□□ 0.72
UPF1-210ENST00000600689 WNT8AQ9H1J5 351 aa19.54■□□□□ 0.72
UPF1-210ENST00000600689 VAV3Q9UKW4 847 aa19.54■□□□□ 0.72
UPF1-210ENST00000600689 FRMPD4Q14CM0 1322 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 YDJCA8MPS7 323 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 F5H6K3 240 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 ALAS1P13196 640 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 ATP5DP30049 168 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 STRN3Q13033 797 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 BMT2Q1RMZ1 405 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 TNFAIP8L3Q5GJ75 292 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 C11orf63Q6NUN7 778 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 FBXO11Q86XK2 927 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 FLAD1Q8NFF5 587 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 DTX3LQ8TDB6 740 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 SNF8Q96H20 258 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 PRKAG3Q9UGI9 489 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 TMEM150BA6NC51 233 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 BMP3P12645 472 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 MTFR1Q15390 333 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 ANO7Q6IWH7 933 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 C1orf186Q6ZWK4 172 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 CYFIP1Q7L576 1253 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 APBB1IPQ7Z5R6 666 aaPredicted RBP19.53■□□□□ 0.72
UPF1-210ENST00000600689 EPS8L1Q8TE68 723 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 CNKSR1Q969H4 720 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 RAB3IPQ96QF0 476 aaPredicted RBP19.53■□□□□ 0.72
UPF1-210ENST00000600689 NAP1L4Q99733 375 aaKnown RBP19.53■□□□□ 0.72
UPF1-210ENST00000600689 TMEM109Q9BVC6 243 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 TBC1D10AQ9BXI6 508 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 GOLGA8SH3BPF8 625 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 GOLGA8MH3BSY2 632 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 IL9RQ01113 521 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 CCDC6Q16204 474 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 AP1ARQ63HQ0 302 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 ZNF365Q70YC5 407 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 KLF6Q99612 283 aaPredicted RBP19.53■□□□□ 0.72
UPF1-210ENST00000600689 AMNQ9BXJ7 453 aa19.53■□□□□ 0.72
UPF1-210ENST00000600689 EXOC1LA0A1B0GW35 172 aa19.52■□□□□ 0.72
UPF1-210ENST00000600689 PEX11AO75192 247 aa19.52■□□□□ 0.72
UPF1-210ENST00000600689 GH2P01242 217 aa19.52■□□□□ 0.72
UPF1-210ENST00000600689 MAPK4P31152 587 aa19.52■□□□□ 0.72
UPF1-210ENST00000600689 VAMP7P51809 220 aa19.52■□□□□ 0.72
UPF1-210ENST00000600689 MUM1Q2TAK8 710 aa19.52■□□□□ 0.72
UPF1-210ENST00000600689 TATDN1Q6P1N9 297 aa19.52■□□□□ 0.72
UPF1-210ENST00000600689 HAUS1Q96CS2 278 aa19.52■□□□□ 0.72
UPF1-210ENST00000600689 MAGEB18Q96M61 343 aa19.52■□□□□ 0.72
UPF1-210ENST00000600689 OLFML3Q9NRN5 406 aa19.52■□□□□ 0.72
UPF1-210ENST00000600689 TOPORSQ9NS56 1045 aaPredicted RBP19.52■□□□□ 0.72
UPF1-210ENST00000600689 TXLNGQ9NUQ3 528 aa19.52■□□□□ 0.72
UPF1-210ENST00000600689 KCNG1Q9UIX4 513 aa19.52■□□□□ 0.72
UPF1-210ENST00000600689 GOLGA8RI6L899 631 aa19.52■□□□□ 0.71
UPF1-210ENST00000600689 ZSCAN5DPP0CG00 497 aa19.52■□□□□ 0.71
UPF1-210ENST00000600689 CETN1Q12798 172 aa19.52■□□□□ 0.71
UPF1-210ENST00000600689 ABCB5Q2M3G0 1257 aa19.52■□□□□ 0.71
UPF1-210ENST00000600689 TMEM154Q6P9G4 183 aa19.52■□□□□ 0.71
UPF1-210ENST00000600689 CCDC174Q6PII3 467 aa19.52■□□□□ 0.71
UPF1-210ENST00000600689 LMO3Q8TAP4 145 aa19.52■□□□□ 0.71
UPF1-210ENST00000600689 MKL1Q969V6 931 aa19.52■□□□□ 0.71
UPF1-210ENST00000600689 RPS6KC1Q96S38 1066 aa19.52■□□□□ 0.71
UPF1-210ENST00000600689 PI4K2AQ9BTU6 479 aa19.52■□□□□ 0.71
UPF1-210ENST00000600689 VPS37BQ9H9H4 285 aa19.52■□□□□ 0.71
UPF1-210ENST00000600689 RNPEPL1Q9HAU8 725 aa19.52■□□□□ 0.71
UPF1-210ENST00000600689 NPHS2Q9NP85 383 aa19.52■□□□□ 0.71
UPF1-210ENST00000600689 SAYSD1Q9NPB0 183 aa19.52■□□□□ 0.71
UPF1-210ENST00000600689 DLGAP2Q9P1A6 1054 aa19.52■□□□□ 0.71
UPF1-210ENST00000600689 NYAP2Q9P242 653 aa19.52■□□□□ 0.71
UPF1-210ENST00000600689 CORO1CQ9ULV4 474 aaPredicted RBP19.52■□□□□ 0.71
UPF1-210ENST00000600689 ARFGEF1Q9Y6D6 1849 aa19.52■□□□□ 0.71
UPF1-210ENST00000600689 BANF1O75531 89 aa19.51■□□□□ 0.71
UPF1-210ENST00000600689 GNAT1P11488 350 aa19.51■□□□□ 0.71
UPF1-210ENST00000600689 GAP43P17677 238 aa19.51■□□□□ 0.71
UPF1-210ENST00000600689 CA4P22748 312 aa19.51■□□□□ 0.71
UPF1-210ENST00000600689 IZUMO3Q5VZ72 239 aa19.51■□□□□ 0.71
UPF1-210ENST00000600689 RFWD3Q6PCD5 774 aa19.51■□□□□ 0.71
UPF1-210ENST00000600689 UCMAQ8WVF2 138 aa19.51■□□□□ 0.71
UPF1-210ENST00000600689 CPA5Q8WXQ8 436 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms