RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	RFC5	P40937	340 aa		13.86	□□□□□ -0.19
UPF1-208	ENST00000600012	PSMD2	Q13200	908 aa		13.86	□□□□□ -0.19
UPF1-208	ENST00000600012	EMC2	Q15006	297 aa		13.86	□□□□□ -0.19
UPF1-208	ENST00000600012	L1TD1	Q5T7N2	865 aa	Known RBP	13.86	□□□□□ -0.19
UPF1-208	ENST00000600012	AGMO	Q6ZNB7	445 aa		13.86	□□□□□ -0.19
UPF1-208	ENST00000600012	MRPL10	Q7Z7H8	261 aa	Known RBP	13.86	□□□□□ -0.19
UPF1-208	ENST00000600012	MYCT1	Q8N699	235 aa		13.86	□□□□□ -0.19
UPF1-208	ENST00000600012	MED15	Q96RN5	788 aa		13.86	□□□□□ -0.19
UPF1-208	ENST00000600012	VN1R3	Q9BXE9	311 aa		13.86	□□□□□ -0.19
UPF1-208	ENST00000600012	EMILIN2	Q9BXX0	1053 aa		13.86	□□□□□ -0.19
UPF1-208	ENST00000600012	DHX33	Q9H6R0	707 aa	Known RBP	13.86	□□□□□ -0.19
UPF1-208	ENST00000600012	RSAD1	Q9HA92	442 aa		13.86	□□□□□ -0.19
UPF1-208	ENST00000600012	PARVG	Q9HBI0	331 aa		13.86	□□□□□ -0.19
UPF1-208	ENST00000600012	FAM86C1	Q9NVL1	165 aa		13.86	□□□□□ -0.19
UPF1-208	ENST00000600012	KANSL3	Q9P2N6	904 aa		13.86	□□□□□ -0.19
UPF1-208	ENST00000600012	PLXNA3	P51805	1871 aa		13.86	□□□□□ -0.19
UPF1-208	ENST00000600012	TDRD15	B5MCY1	1934 aa	Known RBP	13.86	□□□□□ -0.19
UPF1-208	ENST00000600012	SPDYE4	A6NLX3	237 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	BECN2	A8MW95	431 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	GALR2	O43603	387 aa	Predicted RBP	13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	B4GALT3	O60512	393 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	DGAT1	O75907	488 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	ASGR2	P07307	311 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	MYB	P10242	640 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	CASP5	P51878	434 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	ZNF131	P52739	623 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	MYL5	Q02045	173 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	PAK1	Q13153	545 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	STIM1	Q13586	685 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	NCAPH	Q15003	741 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	TMC5	Q6UXY8	1006 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	CCDC149	Q6ZUS6	474 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	ZNF280B	Q86YH2	543 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	TCP11	Q8WWU5	503 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	PRPF31	Q8WWY3	499 aa	Known RBP	13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	NELFB	Q8WX92	580 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	ATOH1	Q92858	354 aa	Predicted RBP	13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	ACSF2	Q96CM8	615 aa	Predicted RBP	13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	DRC1	Q96MC2	740 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	FAM193B	Q96PV7	902 aa	Predicted RBP	13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	TMEM175	Q9BSA9	504 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	TIPIN	Q9BVW5	301 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	LIMD1	Q9UGP4	676 aa		13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	PTPRZ1	P23471	2315 aa	Predicted RBP	13.85	□□□□□ -0.19
UPF1-208	ENST00000600012	TRIM49B	A6NDI0	452 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012		H0Y858	1186 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	GOLGA6L19	H0YKK7	550 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	DDHD2	O94830	711 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	ALDH2	P05091	517 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	SRGAP2C	P0DJJ0	459 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	KLRC2	P26717	231 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	ERCC5	P28715	1186 aa	Predicted RBP	13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	NMT1	P30419	496 aa	Known RBP	13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	HOXA11	P31270	313 aa	Predicted RBP	13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	CLCN4	P51793	760 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	LAMTOR4	Q0VGL1	99 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	COBLL1	Q53SF7	1204 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	GPR149	Q86SP6	731 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	NELFCD	Q8IXH7	590 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	GUF1	Q8N442	669 aa	Known RBP	13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	MCPH1	Q8NEM0	835 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	BSND	Q8WZ55	320 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	TMEM143	Q96AN5	459 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	KLHL5	Q96PQ7	755 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	FIZ1	Q96SL8	496 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	GTPBP4	Q9BZE4	634 aa	Known RBP	13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	POLR3F	Q9H1D9	316 aa	Predicted RBP	13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	SMOC2	Q9H3U7	446 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	MINDY3	Q9H8M7	445 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	MRPL44	Q9H9J2	332 aa	Known RBP	13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	MRPL17	Q9NRX2	175 aa	Known RBP	13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	SEL1L	Q9UBV2	794 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	FAN1	Q9Y2M0	1017 aa		13.84	□□□□□ -0.19
UPF1-208	ENST00000600012	SMTNL1	A8MU46	457 aa		13.83	□□□□□ -0.2
UPF1-208	ENST00000600012		K7ENM7	598 aa		13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	PSMA7	O14818	248 aa		13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	ASAP2	O43150	1006 aa		13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	ERLIN2	O94905	339 aa		13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	GCNT3	O95395	438 aa		13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	UROD	P06132	367 aa		13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	CNP	P09543	421 aa	Known RBP	13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	PLS3	P13797	630 aa		13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	PMS1	P54277	932 aa	Known RBP	13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	PEX3	P56589	373 aa		13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	PCBP1	Q15365	356 aa	Known RBP eCLIP	13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	CT47A1	Q5JQC4	288 aa	Predicted RBP	13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	UBXN11	Q5T124	520 aa		13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	ASTL	Q6HA08	431 aa	Predicted RBP	13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	C15orf39	Q6ZRI6	1047 aa		13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	OTOP3	Q7RTS5	596 aa		13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	TMEM105	Q8N8V8	129 aa		13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	RNF149	Q8NC42	400 aa		13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	ENOX1	Q8TC92	643 aa	Known RBP	13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	SCFD1	Q8WVM8	642 aa		13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	MFSD1	Q9H3U5	465 aa		13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	UBN1	Q9NPG3	1134 aa		13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	OLFML3	Q9NRN5	406 aa		13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	RWDD2A	Q9UIY3	292 aa		13.83	□□□□□ -0.2
UPF1-208	ENST00000600012	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	13.82	□□□□□ -0.2
UPF1-208	ENST00000600012	FAM186A	A6NE01	2351 aa		13.82	□□□□□ -0.2

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