RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 ZNF280BQ86YH2 543 aa17.97■□□□□ 0.47
SHKBP1-219ENST00000599575 ZC3H3Q8IXZ2 948 aaKnown RBP17.97■□□□□ 0.47
SHKBP1-219ENST00000599575 FBXO22Q8NEZ5 403 aa17.97■□□□□ 0.47
SHKBP1-219ENST00000599575 LRCH3Q96II8 777 aa17.97■□□□□ 0.47
SHKBP1-219ENST00000599575 MFSD14AQ96MC6 490 aa17.97■□□□□ 0.47
SHKBP1-219ENST00000599575 C17orf80Q9BSJ5 609 aa17.97■□□□□ 0.47
SHKBP1-219ENST00000599575 LMCD1Q9NZU5 365 aa17.97■□□□□ 0.47
SHKBP1-219ENST00000599575 PUF60Q9UHX1 559 aaKnown RBP17.97■□□□□ 0.47
SHKBP1-219ENST00000599575 FAN1Q9Y2M0 1017 aa17.97■□□□□ 0.47
SHKBP1-219ENST00000599575 TMEM189-UBE2V1I3L0A0 370 aa17.96■□□□□ 0.47
SHKBP1-219ENST00000599575 FGFR1OPO95684 399 aaKnown RBP17.96■□□□□ 0.47
SHKBP1-219ENST00000599575 PSMC2P35998 433 aaKnown RBP17.96■□□□□ 0.47
SHKBP1-219ENST00000599575 AP3M2P53677 418 aa17.96■□□□□ 0.47
SHKBP1-219ENST00000599575 MCCD1P59942 119 aaPredicted RBP17.96■□□□□ 0.47
SHKBP1-219ENST00000599575 TMEM132DQ14C87 1099 aa17.96■□□□□ 0.47
SHKBP1-219ENST00000599575 PSMD6Q15008 389 aa17.96■□□□□ 0.47
SHKBP1-219ENST00000599575 SPATA1Q5VX52 437 aa17.96■□□□□ 0.47
SHKBP1-219ENST00000599575 ISM2Q6H9L7 571 aa17.96■□□□□ 0.47
SHKBP1-219ENST00000599575 INTS8Q75QN2 995 aaKnown RBP17.96■□□□□ 0.47
SHKBP1-219ENST00000599575 CBWD2Q8IUF1 395 aa17.96■□□□□ 0.47
SHKBP1-219ENST00000599575 SLC39A11Q8N1S5 342 aa17.96■□□□□ 0.47
SHKBP1-219ENST00000599575 BEST2Q8NFU1 509 aa17.96■□□□□ 0.47
SHKBP1-219ENST00000599575 KIF12Q96FN5 646 aa17.96■□□□□ 0.47
SHKBP1-219ENST00000599575 TMEM169Q96HH4 297 aa17.96■□□□□ 0.47
SHKBP1-219ENST00000599575 CEP63Q96MT8 703 aa17.96■□□□□ 0.47
SHKBP1-219ENST00000599575 ZMAT2Q96NC0 199 aaKnown RBP17.96■□□□□ 0.47
SHKBP1-219ENST00000599575 RWDD2AQ9UIY3 292 aa17.96■□□□□ 0.47
SHKBP1-219ENST00000599575 PLAGL2Q9UPG8 496 aa17.96■□□□□ 0.47
SHKBP1-219ENST00000599575 FNDC1Q4ZHG4 1894 aaPredicted RBP17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 GOLGA8IPA6NC78 632 aa17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 GOLGA8JA6NMD2 632 aa17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 NRP1O14786 923 aa17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 SLC16A3O15427 465 aaKnown RBP17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 MEFVO15553 781 aaPredicted RBP17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 ARHGEF15O94989 841 aa17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 CD44P16070 742 aaKnown RBP17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 LRPAP1P30533 357 aa17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 CYP24A1Q07973 514 aa17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 ELAVL2Q12926 359 aaKnown RBP17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 ANKRD40Q6AI12 368 aa17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 PDE12Q6L8Q7 609 aaKnown RBP17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 DCLRE1AQ6PJP8 1040 aa17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 WDR49Q8IV35 697 aa17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 TMC2Q8TDI7 906 aa17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 NELFBQ8WX92 580 aa17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 ARNTL2Q8WYA1 636 aa17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 IGSF21Q96ID5 467 aa17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 FNBP1Q96RU3 617 aa17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 TTYH1Q9H313 450 aaPredicted RBP17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 ANO10Q9NW15 660 aa17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 TMEM63CQ9P1W3 806 aa17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 DNAJB4Q9UDY4 337 aa17.95■□□□□ 0.46
SHKBP1-219ENST00000599575 IKBKBO14920 756 aa17.94■□□□□ 0.46
SHKBP1-219ENST00000599575 TRAPPC3O43617 180 aa17.94■□□□□ 0.46
SHKBP1-219ENST00000599575 FGF18O76093 207 aa17.94■□□□□ 0.46
SHKBP1-219ENST00000599575 GNA14O95837 355 aa17.94■□□□□ 0.46
SHKBP1-219ENST00000599575 POU3F3P20264 500 aaPredicted RBP17.94■□□□□ 0.46
SHKBP1-219ENST00000599575 OR1G1P47890 313 aa17.94■□□□□ 0.46
SHKBP1-219ENST00000599575 SLC11A1P49279 550 aa17.94■□□□□ 0.46
SHKBP1-219ENST00000599575 CLDN10P78369 228 aa17.94■□□□□ 0.46
SHKBP1-219ENST00000599575 BMS1Q14692 1282 aaKnown RBP17.94■□□□□ 0.46
SHKBP1-219ENST00000599575 PTPROQ16827 1216 aa17.94■□□□□ 0.46
SHKBP1-219ENST00000599575 UPP1Q16831 310 aa17.94■□□□□ 0.46
SHKBP1-219ENST00000599575 DUOXA2Q1HG44 320 aa17.94■□□□□ 0.46
SHKBP1-219ENST00000599575 GLRA4Q5JXX5 417 aa17.94■□□□□ 0.46
SHKBP1-219ENST00000599575 JADE1Q6IE81 842 aa17.94■□□□□ 0.46
SHKBP1-219ENST00000599575 TTI2Q6NXR4 508 aa17.94■□□□□ 0.46
SHKBP1-219ENST00000599575 CAVIN1Q6NZI2 390 aaKnown RBP17.94■□□□□ 0.46
SHKBP1-219ENST00000599575 GPR65Q8IYL9 337 aa17.94■□□□□ 0.46
SHKBP1-219ENST00000599575 KLHL23Q8NBE8 558 aa17.94■□□□□ 0.46
SHKBP1-219ENST00000599575 FAM212AQ96EL1 285 aa17.94■□□□□ 0.46
SHKBP1-219ENST00000599575 EPB41P11171 864 aaKnown RBP17.93■□□□□ 0.46
SHKBP1-219ENST00000599575 KRT13P13646 458 aa17.93■□□□□ 0.46
SHKBP1-219ENST00000599575 PRKCSHP14314 528 aaPredicted RBP17.93■□□□□ 0.46
SHKBP1-219ENST00000599575 GPM6BQ13491 265 aa17.93■□□□□ 0.46
SHKBP1-219ENST00000599575 STX1AQ16623 288 aa17.93■□□□□ 0.46
SHKBP1-219ENST00000599575 CEP135Q66GS9 1140 aa17.93■□□□□ 0.46
SHKBP1-219ENST00000599575 KLHL10Q6JEL2 608 aa17.93■□□□□ 0.46
SHKBP1-219ENST00000599575 FILIP1Q7Z7B0 1213 aa17.93■□□□□ 0.46
SHKBP1-219ENST00000599575 DDX53Q86TM3 631 aaKnown RBP17.93■□□□□ 0.46
SHKBP1-219ENST00000599575 FAM186BQ8IYM0 893 aa17.93■□□□□ 0.46
SHKBP1-219ENST00000599575 PARD3BQ8TEW8 1205 aa17.93■□□□□ 0.46
SHKBP1-219ENST00000599575 NOC3LQ8WTT2 800 aaKnown RBP17.93■□□□□ 0.46
SHKBP1-219ENST00000599575 METTL14Q9HCE5 456 aaKnown RBP17.93■□□□□ 0.46
SHKBP1-219ENST00000599575 PDE11AQ9HCR9 933 aa17.93■□□□□ 0.46
SHKBP1-219ENST00000599575 INTS13Q9NVM9 706 aa17.93■□□□□ 0.46
SHKBP1-219ENST00000599575 ADAM28Q9UKQ2 775 aa17.93■□□□□ 0.46
SHKBP1-219ENST00000599575 CHD7Q9P2D1 2997 aa17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 STX10O60499 249 aa17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 AKAP3O75969 853 aa17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 PNPLA4P41247 253 aa17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 NFKBIBQ15653 356 aa17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 DPCR1Q3MIW9 517 aa17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 DEFB123Q8N688 67 aa17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 CSGALNACT2Q8N6G5 542 aa17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 RDH13Q8NBN7 331 aa17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 ZSWIM2Q8NEG5 633 aa17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 ANKRD36BP1Q96IX9 119 aa17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 CGRRF1Q99675 332 aa17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 NAT10Q9H0A0 1025 aaKnown RBP17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms