RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 TERF2Q15554 542 aa15.53■□□□□ 0.08
VRK3-217ENST00000599538 MAP9Q49MG5 647 aa15.53■□□□□ 0.08
VRK3-217ENST00000599538 WDR44Q5JSH3 913 aa15.53■□□□□ 0.08
VRK3-217ENST00000599538 NAA35Q5VZE5 725 aa15.53■□□□□ 0.08
VRK3-217ENST00000599538 LLGL2Q6P1M3 1020 aa15.53■□□□□ 0.08
VRK3-217ENST00000599538 TMEM130Q8N3G9 435 aa15.53■□□□□ 0.08
VRK3-217ENST00000599538 FAM212AQ96EL1 285 aa15.53■□□□□ 0.08
VRK3-217ENST00000599538 MRPL4Q9BYD3 311 aaKnown RBP15.53■□□□□ 0.08
VRK3-217ENST00000599538 DDX47Q9H0S4 455 aaKnown RBP15.53■□□□□ 0.08
VRK3-217ENST00000599538 CENPFP49454 3210 aa15.53■□□□□ 0.08
VRK3-217ENST00000599538 CETPP11597 493 aa15.53■□□□□ 0.08
VRK3-217ENST00000599538 SCP2P22307 547 aa15.53■□□□□ 0.08
VRK3-217ENST00000599538 OSTNP61366 133 aa15.53■□□□□ 0.08
VRK3-217ENST00000599538 GABPB1Q06547 395 aaPredicted RBP15.53■□□□□ 0.08
VRK3-217ENST00000599538 MAPK6Q16659 721 aa15.53■□□□□ 0.08
VRK3-217ENST00000599538 GLE1Q53GS7 698 aaKnown RBP15.53■□□□□ 0.08
VRK3-217ENST00000599538 EEF1DP3Q658K8 133 aa15.53■□□□□ 0.08
VRK3-217ENST00000599538 SND1Q7KZF4 910 aaKnown RBP eCLIP15.53■□□□□ 0.08
VRK3-217ENST00000599538 ADAT2Q7Z6V5 191 aaKnown RBP15.53■□□□□ 0.08
VRK3-217ENST00000599538 PHLDB2Q86SQ0 1253 aa15.53■□□□□ 0.08
VRK3-217ENST00000599538 BRSK2Q8IWQ3 736 aa15.53■□□□□ 0.08
VRK3-217ENST00000599538 TCP11Q8WWU5 503 aa15.53■□□□□ 0.08
VRK3-217ENST00000599538 ZNF653Q96CK0 615 aa15.53■□□□□ 0.08
VRK3-217ENST00000599538 PTPN18Q99952 460 aa15.53■□□□□ 0.08
VRK3-217ENST00000599538 KATNBL1Q9H079 304 aa15.53■□□□□ 0.08
VRK3-217ENST00000599538 MGAMO43451 1857 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 INO80B-WBP1J3KQ70 363 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 HBP1O60381 514 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 C22orf31O95567 290 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 SNAI1O95863 264 aaPredicted RBP15.52■□□□□ 0.08
VRK3-217ENST00000599538 FGGP02679 453 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 LGALS2P05162 132 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 FAM153BP0C7A2 387 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 ZNF286BP0CG31 522 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 INSRRP14616 1297 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 CUL2Q13617 745 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 CLEC16AQ2KHT3 1053 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 FAM153CQ494X1 144 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 ENOSF1Q7L5Y1 443 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 TMEM192Q8IY95 271 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 AFG1LQ8WV93 481 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 CASKIN2Q8WXE0 1202 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 CPA5Q8WXQ8 436 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 RIN2Q8WYP3 895 aaPredicted RBP15.52■□□□□ 0.08
VRK3-217ENST00000599538 NUP85Q9BW27 656 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 INO80BQ9C086 356 aaPredicted RBP15.52■□□□□ 0.08
VRK3-217ENST00000599538 MTMR12Q9C0I1 747 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 GDF3Q9NR23 364 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 FAM153AQ9UHL3 310 aa15.52■□□□□ 0.08
VRK3-217ENST00000599538 KRIT1O00522 736 aa15.52■□□□□ 0.07
VRK3-217ENST00000599538 CYP1A2P05177 515 aa15.52■□□□□ 0.07
VRK3-217ENST00000599538 UNGP13051 313 aaPredicted RBP15.52■□□□□ 0.07
VRK3-217ENST00000599538 COMTP21964 271 aa15.52■□□□□ 0.07
VRK3-217ENST00000599538 GTF2A2P52657 109 aa15.52■□□□□ 0.07
VRK3-217ENST00000599538 NOP14P78316 857 aaKnown RBP15.52■□□□□ 0.07
VRK3-217ENST00000599538 NCOA4Q13772 614 aa15.52■□□□□ 0.07
VRK3-217ENST00000599538 TCEAL1Q15170 157 aa15.52■□□□□ 0.07
VRK3-217ENST00000599538 ACAD10Q6JQN1 1059 aa15.52■□□□□ 0.07
VRK3-217ENST00000599538 ZBTB8OSQ8IWT0 167 aa15.52■□□□□ 0.07
VRK3-217ENST00000599538 THNSL1Q8IYQ7 743 aa15.52■□□□□ 0.07
VRK3-217ENST00000599538 MSL3Q8N5Y2 521 aaKnown RBP15.52■□□□□ 0.07
VRK3-217ENST00000599538 IFT81Q8WYA0 676 aa15.52■□□□□ 0.07
VRK3-217ENST00000599538 TRIM7Q9C029 511 aa15.52■□□□□ 0.07
VRK3-217ENST00000599538 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.52■□□□□ 0.07
VRK3-217ENST00000599538 ERAP1Q9NZ08 941 aa15.52■□□□□ 0.07
VRK3-217ENST00000599538 NFU1Q9UMS0 254 aa15.52■□□□□ 0.07
VRK3-217ENST00000599538 PPME1Q9Y570 386 aa15.52■□□□□ 0.07
VRK3-217ENST00000599538 SART1O43290 800 aaKnown RBP15.51■□□□□ 0.07
VRK3-217ENST00000599538 GAS2O43903 313 aaKnown RBP15.51■□□□□ 0.07
VRK3-217ENST00000599538 PHACTR2O75167 634 aa15.51■□□□□ 0.07
VRK3-217ENST00000599538 CLSTN1O94985 981 aa15.51■□□□□ 0.07
VRK3-217ENST00000599538 CLTAP09496 248 aa15.51■□□□□ 0.07
VRK3-217ENST00000599538 CCNA1P78396 465 aa15.51■□□□□ 0.07
VRK3-217ENST00000599538 MCL1Q07820 350 aa15.51■□□□□ 0.07
VRK3-217ENST00000599538 C11orf63Q6NUN7 778 aa15.51■□□□□ 0.07
VRK3-217ENST00000599538 TMEM270Q6UE05 265 aa15.51■□□□□ 0.07
VRK3-217ENST00000599538 TSEN2Q8NCE0 465 aaKnown RBP15.51■□□□□ 0.07
VRK3-217ENST00000599538 ZNF564Q8TBZ8 553 aaPredicted RBP15.51■□□□□ 0.07
VRK3-217ENST00000599538 CCDC102AQ96A19 550 aa15.51■□□□□ 0.07
VRK3-217ENST00000599538 RNPC3Q96LT9 517 aaKnown RBP15.51■□□□□ 0.07
VRK3-217ENST00000599538 FZD8Q9H461 694 aa15.51■□□□□ 0.07
VRK3-217ENST00000599538 GBA2Q9HCG7 927 aaPredicted RBP15.51■□□□□ 0.07
VRK3-217ENST00000599538 PTPRHQ9HD43 1115 aa15.51■□□□□ 0.07
VRK3-217ENST00000599538 CPSF3Q9UKF6 684 aaKnown RBP15.51■□□□□ 0.07
VRK3-217ENST00000599538 GTF3C4Q9UKN8 822 aa15.51■□□□□ 0.07
VRK3-217ENST00000599538 AGPSO00116 658 aa15.5■□□□□ 0.07
VRK3-217ENST00000599538 OGTO15294 1046 aa15.5■□□□□ 0.07
VRK3-217ENST00000599538 PROZP22891 400 aa15.5■□□□□ 0.07
VRK3-217ENST00000599538 SLC26A2P50443 739 aa15.5■□□□□ 0.07
VRK3-217ENST00000599538 TNNC1P63316 161 aa15.5■□□□□ 0.07
VRK3-217ENST00000599538 MBTD1Q05BQ5 628 aa15.5■□□□□ 0.07
VRK3-217ENST00000599538 GLIPR1L2Q4G1C9 344 aa15.5■□□□□ 0.07
VRK3-217ENST00000599538 GPR142Q7Z601 462 aa15.5■□□□□ 0.07
VRK3-217ENST00000599538 PASD1Q8IV76 773 aa15.5■□□□□ 0.07
VRK3-217ENST00000599538 CYFIP2Q96F07 1278 aa15.5■□□□□ 0.07
VRK3-217ENST00000599538 IFT122Q9HBG6 1241 aa15.5■□□□□ 0.07
VRK3-217ENST00000599538 ERVK-5Q9HDB9 667 aa15.5■□□□□ 0.07
VRK3-217ENST00000599538 AMACRQ9UHK6 382 aa15.5■□□□□ 0.07
VRK3-217ENST00000599538 PCDHB4Q9Y5E5 795 aa15.5■□□□□ 0.07
VRK3-217ENST00000599538 PCDHB2Q9Y5E7 798 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms